PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.307870.1
Common NameCsa_5G623900
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 326aa    MW: 37364.6 Da    PI: 7.9267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.307870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-062242323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cg  F+ + +Lk+H+++H
  Cucsa.307870.1 22 CQQCGAAFRKPAYLKQHMQSH 42
                    *******************99 PP
2zf-C2H2163.5e-054872123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    y C+   C+ s++rk++L+rH+  H
  Cucsa.307870.1 48 YICSvdGCNASYRRKDHLTRHLLHH 72
                    899999***************9987 PP
3zf-C2H218.26.9e-06125149123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk+F+  s L++H  +H
  Cucsa.307870.1 125 FVCPedGCGKVFRYASRLQKHEGSH 149
                     89*******************8666 PP
4zf-C2H223.81.1e-07218241323
                     ET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                     C+   C+k+Fs+ snL++H+++ H
  Cucsa.307870.1 218 CTyeGCSKVFSTASNLQQHMKVvH 241
                     88889****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0172042IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0482047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-92247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.22E-113474No hitNo description
SMARTSM003550.00414872IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-104874IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4944877IPR007087Zinc finger, C2H2
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
SMARTSM003555.677102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75977107IPR007087Zinc finger, C2H2
PROSITE patternPS00028079102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-8119149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.32E-5122150No hitNo description
PROSITE profilePS5015710.762125154IPR007087Zinc finger, C2H2
SMARTSM003556.8E-4125149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127149IPR007087Zinc finger, C2H2
SMARTSM003550.55157182IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4159182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
SMARTSM003555.6185207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.7E-8197253No hitNo description
SMARTSM003557.6E-5216241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.006216246IPR007087Zinc finger, C2H2
PfamPF000962.4E-5217241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-8218241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4242269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.8247273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEIGKHNDDG DDKTKSGKFN ICQQCGAAFR KPAYLKQHMQ SHSLERPYIC SVDGCNASYR  60
RKDHLTRHLL HHQGTMFKCP IESCCREFAY ASCVSRHLKE CHEGEVPPEE CHEGEAPPEE  120
CKKQFVCPED GCGKVFRYAS RLQKHEGSHV KLDSIEACCT EPGCLKTFTN KQCLRAHMQT  180
CHQYVKCEIC GEKKLRKNLK QHLRQKHESE GPLEAIPCTY EGCSKVFSTA SNLQQHMKVV  240
HLEQKPFVCC FPGCGMRFGY KHVRDNHEKS GQHVYTNGDF EAADEQFRSK PRGGRKRICP  300
TVEMLIRKRV TPPSELDFMM EEEDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C3e-152228164314Zinc finger protein 568
5wjq_D3e-152227739285Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2841200.0EU284120.1 Cucumis sativus C2H2 zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142387.20.0PREDICTED: zinc finger X-linked protein ZXDB
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0A0KV540.0A0A0A0KV54_CUCSA; Uncharacterized protein
STRINGXP_008446968.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-86transcription factor IIIA
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]