PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.308240.2

Common Name

Csa_5G623500, LOC101222167

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 1321aa MW: 143646 Da PI: 5.79

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.308240.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.4e-09	657	698	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE + + +av +G++ ++ I+r++ +++ qck ++ Cucsa.308240.2 657 SNWTDEEKLVFMQAVSSYGKD-FDMISRCIR-SKSRDQCKIFFS 698 58***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-12	427	489	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.656	439	490	IPR017884	SANT domain
SMART	SM00717	3.1E-5	440	488	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-5	651	699	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.03E-10	653	705	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.622	654	705	IPR017884	SANT domain
SMART	SM00717	2.9E-6	655	703	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-6	658	697	IPR001005	SANT/Myb domain
CDD	cd00167	1.73E-5	658	697	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1321 aa Download sequence Send to blast
MICSSPGSGS QNLQKLLCSI EKMEISSVAN LGSSLVELFH SDDPNTIESC FGKSTLNKLL 60 AYKGEISKTL EMTESEIDSL ENELKSLKSV NGGNVSHKKS CSATRVMESS TYFKEQDGIS 120 CIATRPAPLV VVSSSDATVE KVPLCKGDVG VEDVDTKADE IDSPGTVTSK FNEPSRVVKA 180 IASDIVDNGH CSVVTDAIVP GKMEGSFPIS GPFVDEHETI GSGNECTLAK SCTSESVYGD 240 LMAQAGSRSS LCDSIFACNK EYASRAAEVI FKRSPVGMCK ISSKSTKNVS CSETEKLIKE 300 KFVMRKKFLK FKESALTLRF KSLQQSWKEG LLHSVKKCRS RPQKKELSLR VTHSGHQKYR 360 SSSIRSRLVQ QGACQSSTFN TEIAVRHSSK LLLNPQIKLY RNTLKMPAMI LDKKEKIALR 420 FISHNGLVED PCAVEKERNL INPWTSAEKE IFWEKLSLFG KDFKKISSFL DLKTTADCIQ 480 FYYKNHKSDS FKKNKNLELG KQMKSSAITY LVTSGKKWNP DANATSLDIL GVASVMAAQA 540 DYDIENQQKC TRHLGVGRDV ESKVSWSASS PNKSNLDDLQ TEKETVAADV LAGISGSISS 600 EALSSCITSA IDPREELRER KCYKVDFAAK LPSLSDVMQK TDNEPCSDDS SEDVDSSNWT 660 DEEKLVFMQA VSSYGKDFDM ISRCIRSKSR DQCKIFFSKA RKCLGLDLMH TSGDVGETPG 720 NGNDASGSGS GTDTEEHCVV EICEGRGSDE FISKSINGGS TSVNINHEET VSAVTDNMRT 780 SMEFEESTAL QQSDEKGAEA VGNLIFETLK EEDVPNPSQP THDHKIEGSS ENTESGKSCN 840 EPDILRSESV STVDENSAAV SEGRATVKLA IGEEEVGSDT NLHGQSTILC SGQDSTGNDS 900 NIALEGSSVG LDPHILHPNI LKVEPVEKKS CIKSEENFLS VRNSDTGVIG REQMLNQDIS 960 SSTLILQEIS DANQKPMNRD DDAEHPNNLL CNSESSTFPR SYPFNKQIFE DINRNINHAY 1020 FRVQGLSKPD INCNSKYVSE GQFLQNCNSS KPHNLAEPPF LSQNIELGHD HQKNASGSGS 1080 ASDSDVPCRK GDVKLFGQIL SHAPSQQNSS SGSNECGEKK GPLHNSSSKS CDMGENIPLR 1140 SYGFWDGSRI QTGLSALPDS AILQAKYPAA FSGYSATSVK TEQQPLQALS NNGDQSLNEL 1200 VSAFPTKDGV VDYHSHRSRD GVKMRPFPVD IFSEMHRRNG FDAVSLSSLQ QQGRVLVGMN 1260 VVGRGGILMG GSCTGVSDPV AAIKMHYAKA DQYAGQPASM FTREDGSWRG GGNGGDLGSR 1320 *

Sequence ? help Back to Top

Protein Sequence Length: 1321 aa Download sequence Send to blast

MICSSPGSGS QNLQKLLCSI EKMEISSVAN LGSSLVELFH SDDPNTIESC FGKSTLNKLL  60
AYKGEISKTL EMTESEIDSL ENELKSLKSV NGGNVSHKKS CSATRVMESS TYFKEQDGIS  120
CIATRPAPLV VVSSSDATVE KVPLCKGDVG VEDVDTKADE IDSPGTVTSK FNEPSRVVKA  180
IASDIVDNGH CSVVTDAIVP GKMEGSFPIS GPFVDEHETI GSGNECTLAK SCTSESVYGD  240
LMAQAGSRSS LCDSIFACNK EYASRAAEVI FKRSPVGMCK ISSKSTKNVS CSETEKLIKE  300
KFVMRKKFLK FKESALTLRF KSLQQSWKEG LLHSVKKCRS RPQKKELSLR VTHSGHQKYR  360
SSSIRSRLVQ QGACQSSTFN TEIAVRHSSK LLLNPQIKLY RNTLKMPAMI LDKKEKIALR  420
FISHNGLVED PCAVEKERNL INPWTSAEKE IFWEKLSLFG KDFKKISSFL DLKTTADCIQ  480
FYYKNHKSDS FKKNKNLELG KQMKSSAITY LVTSGKKWNP DANATSLDIL GVASVMAAQA  540
DYDIENQQKC TRHLGVGRDV ESKVSWSASS PNKSNLDDLQ TEKETVAADV LAGISGSISS  600
EALSSCITSA IDPREELRER KCYKVDFAAK LPSLSDVMQK TDNEPCSDDS SEDVDSSNWT  660
DEEKLVFMQA VSSYGKDFDM ISRCIRSKSR DQCKIFFSKA RKCLGLDLMH TSGDVGETPG  720
NGNDASGSGS GTDTEEHCVV EICEGRGSDE FISKSINGGS TSVNINHEET VSAVTDNMRT  780
SMEFEESTAL QQSDEKGAEA VGNLIFETLK EEDVPNPSQP THDHKIEGSS ENTESGKSCN  840
EPDILRSESV STVDENSAAV SEGRATVKLA IGEEEVGSDT NLHGQSTILC SGQDSTGNDS  900
NIALEGSSVG LDPHILHPNI LKVEPVEKKS CIKSEENFLS VRNSDTGVIG REQMLNQDIS  960
SSTLILQEIS DANQKPMNRD DDAEHPNNLL CNSESSTFPR SYPFNKQIFE DINRNINHAY  1020
FRVQGLSKPD INCNSKYVSE GQFLQNCNSS KPHNLAEPPF LSQNIELGHD HQKNASGSGS  1080
ASDSDVPCRK GDVKLFGQIL SHAPSQQNSS SGSNECGEKK GPLHNSSSKS CDMGENIPLR  1140
SYGFWDGSRI QTGLSALPDS AILQAKYPAA FSGYSATSVK TEQQPLQALS NNGDQSLNEL  1200
VSAFPTKDGV VDYHSHRSRD GVKMRPFPVD IFSEMHRRNG FDAVSLSSLQ QQGRVLVGMN  1260
VVGRGGILMG GSCTGVSDPV AAIKMHYAKA DQYAGQPASM FTREDGSWRG GGNGGDLGSR  1320
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-16	401	492	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-16	401	492	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142488.1	0.0	PREDICTED: uncharacterized protein LOC101222167
TrEMBL	A0A0A0KWU7	0.0	A0A0A0KWU7_CUCSA; Uncharacterized protein
STRING	XP_004142488.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Cucsa.308240.2
Entrez Gene	101222167

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]