PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.308770.2
Common NameCsa_5G622470, LOC101211422
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 454aa    MW: 49678.8 Da    PI: 4.0732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.308770.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.2e-10127102128
             NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                     +kktLv++ grap+g +t+Wvmhey+l
  Cucsa.308770.2   1 MKKTLVYHIGRAPRGARTNWVMHEYKL 27 
                     8************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-15150IPR003441NAC domain
PROSITE profilePS5100520.533150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009819Biological Processdrought recovery
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MKKTLVYHIG RAPRGARTNW VMHEYKLTDE EMGKIAIVQD AFVLCRIFQK SGTGPKNGEQ  60
YGAPFIEEEW EENEELAVVP GDDQAADELL GVGGVCIEGD DFSENVEEGI LSESAPPPPF  120
NYYYGETSNS IEQSDNYIED DQKPAVGICE TSELPDGQKF FVLPDECGLH DRLVKHEYLA  180
ESSNDAGANA ADEVNAGDMD GRYVLNEAFY STSDNLSFSD ELLLEPNELS NPTESDPADF  240
DVLEEYLTFF DADGDNVDMS FDPSEILGSG SPIPDQTEAV GGATEHASAS KQTADLRHDN  300
GASSSSMQRP EDPKSESDIK YPFLKHTSHM LGSIPAPFAS QFTSKDAAIH LNSAPQASSS  360
VRVTAGMLVI RNIALNGYEV NNMYGKNSDL NIIYLYGIVE GNINSSQLLP NAAGVNSSKS  420
EPLISRYFLY FFILFWVLIL SASFKVARCI HSR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00343DAPTransfer from AT3G10500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655859.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A0A0KRG60.0A0A0A0KRG6_CUCSA; Uncharacterized protein
STRINGXP_004173168.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-81NAC domain containing protein 53
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]