PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.309420.1

Common Name

Csa_2G416070, LOC105434687

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 276aa MW: 31509.8 Da PI: 6.9257

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.309420.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	7e-12	149	200	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 kr +r NR +ArrsR +K+++i eLe+ v +L+ae ++L ++ l ++ Cucsa.309420.1 149 KRVKRILANRQSARRSRVKKLQYISELERSVTTLQAEVSMLSPRVAFLDQQR 200 899************************************9998887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-15	145	209	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.841	147	199	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.8E-13	149	200	No hit	No description
Pfam	PF00170	1.4E-9	149	195	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.99E-11	149	203	No hit	No description
CDD	cd14703	1.19E-20	150	200	No hit	No description
PROSITE pattern	PS00036	0	152	167	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MPNLPPKIPN LTTPHHFPQH NNHFLSFSSS KQSFHRRSVS DSIAFLDSPT MMSQSFLGSP 60 ASISNSNNAF DGFDEEQFRS MLSDEIHSNN EDDEPTSSDH NSNEKSEGTT NDDPKHSVRN 120 EPKEEVESRQ WEDNVVPTNI SNDRVTDPKR VKRILANRQS ARRSRVKKLQ YISELERSVT 180 TLQAEVSMLS PRVAFLDQQR LLLNVDNSAL KQRIATLSQD KIFKDAHEEA LKREIERLGQ 240 LYHRQQKSKR MECNESSPTE PPTSSGDQKH KLLYV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681916	0.0	LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649984.1	0.0	PREDICTED: basic leucine zipper 34-like
Swissprot	F4IN23	1e-72	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A0A0LT56	0.0	A0A0A0LT56_CUCSA; Uncharacterized protein
STRING	XP_008455935.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-74	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.309420.1
Entrez Gene	105434687

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]