PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.309430.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 220aa    MW: 24723.8 Da    PI: 8.5637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.309430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.82.1e-3414102189
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                     aCaaCk++r+kC + C+lapyfpae++++f++vhk+FG+snv+k++k+++ee++++a++sl++eA +r++dPv G +g ++++ ++++ 
  Cucsa.309430.1  14 ACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKV 102
                     7*****************************************************************************99998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.83813113IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3314102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQKHNNGVLQ GTPACAACKH QRKKCHETCP LAPYFPAERN REFQAVHKVF GVSNVTKMVK  60
NVREEDKRKA VDSLIWEAVC RQNDPVLGPY GEYKRVLEEV KVCKLLTQNQ SIMNGGQVGL  120
GYKPIIPCLG AWNNNNNNNS NDNNNNNGNG NGVNSSHLLN YFHDNYVSAI VDSSPYSNSS  180
AYNLQSHEKL MRLQQDKEIS SNMVVPLQQQ QHPTFHHCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-181191988LOB family transfactor Ramosa2.1
5ly0_B3e-181191988LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819160.0LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901865.11e-128PREDICTED: LOB domain-containing protein 2
TrEMBLA0A1S4E1K11e-127A0A1S4E1K1_CUCME; LOB domain-containing protein 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-45LOB domain-containing protein 2