PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.310460.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 345aa    MW: 39383 Da    PI: 4.3967
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.310460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-09278325653
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +++k q+e+Le+++++++ p+ +++  + + ++L+ +++  WF  +R 
  Cucsa.310460.1 278 RLKKVQIETLERVYRRTKRPTNAMISSIVQVTNLPRKRIVKWFEDKRV 325
                     57899***************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.62270330IPR001356Homeobox domain
SuperFamilySSF466893.38E-9274328IPR009057Homeodomain-like
SMARTSM003892.7E-5276334IPR001356Homeobox domain
CDDcd000864.94E-7276324No hitNo description
PfamPF000463.1E-7278325IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-8278325IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFLSAPATAP EALPGSPSIS DRGRFFFRRR PFPSNFTLLH RPPVCRTLSL TFARRRNQNS  60
SVSSSSSSSK KKKRNLIPKE ARDEEEDVEE DALELLFSQL EEDLKNDASS LDEGEDDEFS  120
EEDLARLERE LGLALGIDVD EEEEEAEEEE EEEEEEEDDD DGDDEDDEEE EMPVKLKNWQ  180
LRRLALALKK GRRKTSIKSL AAELCLDRTV VLELLREPPP NLLMLSASLP DTPKPSIIET  240
KTLQTTDEEP LVVDTAKEEE VTKVPVHVMQ QSWAAQKRLK KVQIETLERV YRRTKRPTNA  300
MISSIVQVTN LPRKRIVKWF EDKRVEDGVP DPRLPFDRSS PQSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15373RRRNQNSSVSSSSSSSKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-141LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-141LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466390.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A1S3CRB10.0A0A1S3CRB1_CUCME; protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
STRINGXP_008466390.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101813138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-48overexpressor of cationic peroxidase 3