PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.311970.5
Common NameCsa_3G891670
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 371aa    MW: 40733.9 Da    PI: 8.7977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.311970.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08183228145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++W++ Ed+ l+ av++ G g+W+ I +      Rt+ q+  rw 
   Cucsa.311970.5 183 RKPWSKAEDLELIAAVEKCGEGNWANILKGDFkGDRTASQLSQRWS 228
                      789************************9842235999999999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.978178235IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-13179232IPR009057Homeodomain-like
SuperFamilySSF466896.39E-12180232IPR009057Homeodomain-like
SMARTSM007173.3E-9182233IPR001005SANT/Myb domain
PfamPF002492.8E-7183227IPR001005SANT/Myb domain
CDDcd116605.97E-14184232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MRGFWLWDRY SVRTILTLLR EVAQVSGVRI DWDKLVENTS TGISDAREYQ LLWRHLAYRQ  60
TLLEDMHSVT DSLDYDSDLD FEVEPFPSVS SESSNEASAC VKVLIANSIP NESDVPNSSA  120
VEAPLTIGIS NCQPSTDNLD HHQSTYLQRM SVTIPLSIQR QPIPMPSATE VIDVNGATSR  180
KRRKPWSKAE DLELIAAVEK CGEGNWANIL KGDFKGDRTA SQLSQRWSVI RKRRCNLNIG  240
ASTSSTAHKA QIDAAHRALS FALDLPVNNS KTANSNINSS IVSSASGSES SIQMQNQSPQ  300
ISMPSRRINT PKNSLMIKST HDSDSIVRAT AVAAGARIVS PSDAASLLKA TQTKNAIHIK  360
SKCKLKLCKW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-108LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-108LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652579.10.0PREDICTED: uncharacterized protein LOC101205013 isoform X2
TrEMBLA0A0A0LHM80.0A0A0A0LHM8_CUCSA; Uncharacterized protein
STRINGXP_004136421.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-56MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]