PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.312530.1
Common NameCsa_3G895650, LOC101221905
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 352aa    MW: 39076.8 Da    PI: 5.8328
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.312530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.9e-18247281135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cucsa.312530.1 247 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 281
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.8E-8421337IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.101.4E-14241278IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.558241277IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18241291IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-15242305No hitNo description
CDDcd002028.50E-15246293No hitNo description
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15247281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGPEYFQPG FSSQFSTEDR QSSDANKTNT AAAPPTTADH FIVEDLLDFS NDDDVVFTDG  60
TFDNQTPTST DSSTLTLLDS CNSYPNTGNA HNYHFADANF STDLGVPYDD LAELEWLSNF  120
VEDSFSTDDL EKLSLISGMN SRADVHDDDA SKAREFQTGF NRNHSPGFRH EMSVVPAKAA  180
RSKRSRAAPC IWNSRLSVLS PTNSSSETDV VVTLTPHPNT AKKTTKKKEI PDDTSSAAGN  240
NGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTKHSN  300
SHRKVMELRR QKEMMRAQQQ QQYLHHESMG FDHVSNDDDY LIHQHIGPLY Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652614.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826328e-84GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0A0LH130.0A0A0A0LH13_CUCSA; GATA transcription factor
STRINGXP_008466068.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-70GATA transcription factor 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]