PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.312940.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 306aa    MW: 34188.3 Da    PI: 6.6236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.312940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++ v++ G g+W+  ++  g++R++k+c++rw +yl
   Cucsa.312940.1 14 KGPWTPEEDEKLIEFVAKNGHGSWRNLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.18.3e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +++++ +lG++ W++Ia++++ gRt++++k++w+++l
   Cucsa.312940.1  67 RGKFSEEEETSIIKLHSLLGNR-WSKIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.997961IPR017930Myb domain
SuperFamilySSF466891.16E-3111108IPR009057Homeodomain-like
SMARTSM007171.3E-151363IPR001005SANT/Myb domain
PfamPF002491.9E-171461IPR001005SANT/Myb domain
CDDcd001673.01E-121661No hitNo description
PROSITE profilePS5129427.47962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2765116IPR009057Homeodomain-like
SMARTSM007172.4E-1766114IPR001005SANT/Myb domain
PfamPF002499.6E-1767112IPR001005SANT/Myb domain
CDDcd001674.82E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRSPCCDEN GVKKGPWTPE EDEKLIEFVA KNGHGSWRNL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEETSIIK LHSLLGNRWS KIASHLPGRT DNEIKNFWNT HLRKKLLQMG  120
IDPNTHKPRT DLNHFLNLSQ LFNNGIPNPL TSDHLKLQAE IAKLQLLQNL CQLLNPTTAI  180
PTTINSNGFQ NPNPSQFQAG SSTGFASVSG FEDGDKINKA NKLEEMGSFD YVIQPENYYQ  240
LPPLILESPD GSTSNVNQIE SIETNPLCFS TNSNSPTPSS SIFDSLESLM NDDEASGSYW  300
KNILQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
1h8a_C3e-291411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465998.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z24e-84MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1S3CQ730.0A0A1S3CQ73_CUCME; transcription factor MYB39
STRINGXP_004136397.10.0(Cucumis sativus)
STRINGXP_004165323.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-83myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]