PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.313010.1
Common NameCsa_3G901180, LOC101210413
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 322aa    MW: 36392 Da    PI: 7.9769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.313010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14105156155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  Ave++k+L+
  Cucsa.313010.1 105 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAVEFVKELE 156
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-15103172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-14103159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-11103160No hitNo description
PROSITE profilePS5088815.205104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSLDALSSND LFNFIIYDTI SATPNTSNNN VVPHHDSSEN TFLSDDKCSK PNSRKRCTSE  60
VEISNRVVVP LSTTTTTTTT TTQHGKKKRK RKAKVCKNKE EAETQRMTHI AVERNRRKQM  120
NEHLSVLRSL MPESYVQRGD QASIVGGAVE FVKELEHLLS TLEAKKLQIL QQEVDQHQEQ  180
EMNEDSRIRK NDNNDNNNKL FSFASLLMNN SDQNNYSSQY STKYTSKSKA SSADIEVTLI  240
ETHANLRILS TRSHRQLLKL IAGLQALRLT ILHLNLTDFH PLVLYSISLK VEEGCQLRSV  300
DDIAAAAHHM VRIIEEEAVL C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591KKKRKRK
28691KKRKRK
3105116RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136191.10.0PREDICTED: transcription factor bHLH71
SwissprotQ9SK916e-67BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0A0LF140.0A0A0A0LF14_CUCSA; Uncharacterized protein
STRINGXP_004136191.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-61bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]