PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.313750.1

Common Name

Csa_3G912920

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 542aa MW: 60623 Da PI: 7.0361

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.313750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.3	1.2e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Cucsa.313750.1 7 CCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 99************55555*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.9E-9	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.05E-10	4	45	No hit	No description
CDD	cd00202	7.41E-15	6	51	No hit	No description
PROSITE profile	PS50114	11.345	7	40	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.0E-12	7	41	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.3E-11	7	41	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF13919	2.1E-9	287	374	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEYEDH 60 RVSRMKSISI NKNKEVKLLK RKLQQADGSI GWMIPDQGQG YHRVVDEDTS NRSSSGSAIS 120 NPESCAHFSS ADASDLTGPA QSIVWESMVP SRKRTCVNRP KQSPVEKLTK DLYSILREQR 180 SSYFSEASED DLLFESEKPM VSVEIGHGSI LIRHPSSIAR EEESEASSIS VDNKQCLVNE 240 VYSPHSTTVR VCSENKGINF PTSRIGKMKN PYGSGVQQEQ IKRNDSHHEC LQILGNHNSP 300 LCDVDINDII NFEEFARQLT NEEQQQLMKY LPQIDIAEFP ETLKSMFDSP YFKENLTSFQ 360 QLLSEGVFDV SFLETKVEDC KTLKRLVLYN SSKSKWVERY HQLKKCKNGS KGPFLSHANA 420 SVSSNFTNVK QLCESYNQNI PEAKTILKSP KRLVMKENKD PGENDGSCFS PRSLFALPPD 480 GSSLMLESLH FVEESSDQDL LLDVRSNSSF PQAELLHPTS RSGGRQASTC SSSVHPHLVH 540 H*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEYEDH  60
RVSRMKSISI NKNKEVKLLK RKLQQADGSI GWMIPDQGQG YHRVVDEDTS NRSSSGSAIS  120
NPESCAHFSS ADASDLTGPA QSIVWESMVP SRKRTCVNRP KQSPVEKLTK DLYSILREQR  180
SSYFSEASED DLLFESEKPM VSVEIGHGSI LIRHPSSIAR EEESEASSIS VDNKQCLVNE  240
VYSPHSTTVR VCSENKGINF PTSRIGKMKN PYGSGVQQEQ IKRNDSHHEC LQILGNHNSP  300
LCDVDINDII NFEEFARQLT NEEQQQLMKY LPQIDIAEFP ETLKSMFDSP YFKENLTSFQ  360
QLLSEGVFDV SFLETKVEDC KTLKRLVLYN SSKSKWVERY HQLKKCKNGS KGPFLSHANA  420
SVSSNFTNVK QLCESYNQNI PEAKTILKSP KRLVMKENKD PGENDGSCFS PRSLFALPPD  480
GSSLMLESLH FVEESSDQDL LLDVRSNSSF PQAELLHPTS RSGGRQASTC SSSVHPHLVH  540
H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148382.1	0.0	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-151	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A1S3CQA3	0.0	A0A1S3CQA3_CUCME; GATA transcription factor 26-like
STRING	XP_004165951.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4424	31	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-152	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Cucsa.313750.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]