PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.319680.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 209aa MW: 24204.6 Da PI: 10.1307

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.319680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94	2.3e-29	5	79	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ew+fFs+r kky++g++++rat+ gyWkatgk+++v+s +++++g+k+tLvf++grapkge+t+W+mhey+ Cucsa.319680.1 5 QSDNEWFFFSPRGKKYPNGNQTRRATDLGYWKATGKERNVKS-GSNTIGTKRTLVFHTGRAPKGERTEWIMHEYNT 79 4689************************************.99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.19	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	9.94E-31	5	94	IPR003441	NAC domain
Pfam	PF02365	3.9E-14	9	78	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
KSIIQSDNEW FFFSPRGKKY PNGNQTRRAT DLGYWKATGK ERNVKSGSNT IGTKRTLVFH 60 TGRAPKGERT EWIMHEYNTK DKAQRLGQTT WLHVSVLNKI CRNEPYARLC CRFSVNYRAF 120 YASTISDKFP ILVIEELLDE LPRAKFFSKL GLLYKSYFSF FIISKLPTVE PYLPFSSPPF 180 ATSYLFYSEP PPTRIARYET SSMQQSND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-24	6	108	69	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-24	6	108	69	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-24	6	108	69	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-24	6	108	69	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-24	6	108	72	173	NAC domain-containing protein 19
3swm_B	3e-24	6	108	72	173	NAC domain-containing protein 19
3swm_C	3e-24	6	108	72	173	NAC domain-containing protein 19
3swm_D	3e-24	6	108	72	173	NAC domain-containing protein 19
3swp_A	3e-24	6	108	72	173	NAC domain-containing protein 19
3swp_B	3e-24	6	108	72	173	NAC domain-containing protein 19
3swp_C	3e-24	6	108	72	173	NAC domain-containing protein 19
3swp_D	3e-24	6	108	72	173	NAC domain-containing protein 19
4dul_A	3e-24	6	108	69	170	NAC domain-containing protein 19
4dul_B	3e-24	6	108	69	170	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681929	1e-126	LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080.
GenBank	LN713266	1e-126	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32362	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	6e-43	NAC domain containing protein 89

Link Out ? help Back to Top
Phytozome	Cucsa.319680.1