PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.319840.1
Common NameCsa_1G165230, LOC101207407
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 239aa    MW: 27657.2 Da    PI: 6.2616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.319840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.92.1e-45161462128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     ppGfrF Pt+eelv++yL ++++++  e ++vi+ ++iy+++PwdLpk     +k+++++w+fF++r++++a+g r++r+t++gyWkatg+   v
  Cucsa.319840.1  16 PPGFRFYPTEEELVSFYLPHQLQTQLPEKHRVIPLLNIYDFDPWDLPKlageLCKGDNEQWFFFVPRQEREARGGRPSRTTAAGYWKATGSPVYV 110
                     9*************************999999***************656764556778************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s+ ++++glkkt+vfykgrap+g+kt+W mheyr+
  Cucsa.319840.1 111 YSSASKVIGLKKTMVFYKGRAPTGTKTKWKMHEYRA 146
                     **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5012163IPR003441NAC domain
PROSITE profilePS5100550.07815165IPR003441NAC domain
PfamPF023656.6E-2416145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAMQEEEEEE SIHEYPPGFR FYPTEEELVS FYLPHQLQTQ LPEKHRVIPL LNIYDFDPWD  60
LPKLAGELCK GDNEQWFFFV PRQEREARGG RPSRTTAAGY WKATGSPVYV YSSASKVIGL  120
KKTMVFYKGR APTGTKTKWK MHEYRAIDDS AKLRHEFSLC RVYVISGCFR AFDRRPMESI  180
AAARKNADSK RKGKVSSPEI SCSAAAMVHC DGSGSNWRMD EDEEFEESIW EWEKMDWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-3511637166NAC domain-containing protein 19
3swm_B3e-3511637166NAC domain-containing protein 19
3swm_C3e-3511637166NAC domain-containing protein 19
3swm_D3e-3511637166NAC domain-containing protein 19
3swp_A3e-3511637166NAC domain-containing protein 19
3swp_B3e-3511637166NAC domain-containing protein 19
3swp_C3e-3511637166NAC domain-containing protein 19
3swp_D3e-3511637166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819281e-124LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132661e-124LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139492.11e-180PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR32e-79NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0A0LSP71e-178A0A0A0LSP7_CUCSA; Uncharacterized protein
STRINGXP_004159099.11e-179(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-78NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]