PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.320600.1
Common NameCsa_3G033810, LOC101219601
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family YABBY
Protein Properties Length: 186aa    MW: 20590.4 Da    PI: 8.6215
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.320600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY214.53.3e-66171826169
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvss 98 
                      s+q+Cyv+Cn C+t+lavsvPstslfk vtvrCG+C++ll vn+   + ll++ s+++  ++ +  l  ++++  e+++  + +   ++t+   
  Cucsa.320600.1  17 PSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGM-LLPSPSQFHGFTHSTtfLSPNTHNFLEEISNPNPNFLMNQTEGID 110
                     68*****************************************987765.566666643332222233333333333333333333333444444 PP

           YABBY  99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                      ++ +   ++vpr+pp ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+i fg
  Cucsa.320600.1 111 LTMATRVPNDVPRQPPtINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIRFG 182
                     4668889999**999989****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-6617182IPR006780YABBY protein
SuperFamilySSF470958.77E-9121176IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.7E-5131177IPR009071High mobility group box domain
CDDcd013901.32E-5137173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSSSSHPTTF SQLPPPPSDQ LCYVHCNICD TVLAVSVPST SLFKRVTVRC GYCANLLPVN  60
MCGGMLLPSP SQFHGFTHST TFLSPNTHNF LEEISNPNPN FLMNQTEGID LTMATRVPND  120
VPRQPPTINR PPEKRQRVPS AYNRFIKDEI QRIKAANPDI SHREAFSAAA KNWAHFPHIR  180
FGSSS*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-81LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-81LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150647.11e-136PREDICTED: protein YABBY 4 isoform X2
SwissprotA2X7Q39e-61YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6689e-61YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0A0L1N81e-134A0A0A0L1N8_CUCSA; Uncharacterized protein
STRINGXP_004150647.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-58YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]