PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.320970.1

Common Name

Csa_3G019980, LOC101210780

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 253aa MW: 28211.8 Da PI: 8.6564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.320970.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C++sF++ L H++ H Cucsa.320970.1 6 HKCRLCSRSFTNGRALGGHMKAH 28 79******************998 PP
2	zf-C2H2	15.2	6.3e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F+++ L H +++ Cucsa.320970.1 144 FRCGKCRKTFRSNRALFGHRKVC 166 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.12E-5	2	30	No hit	No description
Pfam	PF13912	1.1E-6	5	29	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.048	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.4E-8	142	213	No hit	No description
SMART	SM00355	33	144	164	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	144	173	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.028	144	164	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.056	191	213	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.702	191	213	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.0E-11	191	213	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEEERHKCRL CSRSFTNGRA LGGHMKAHLA TFSIEHQKTF KSPDLEMLSA NGSISIVQDR 60 ESETESKNPT RRRSKRTRRL NTESLPSPSP EPASSISDTS PEEDVAICLV MLSMEKPSSW 120 KDQSRTPESE KSTAAMVGRV RKSFRCGKCR KTFRSNRALF GHRKVCRKEG EEEDGEEEEK 180 GMINGGNWKI FKCPYCCKVF GSGQALGGHK RSHIQGSIRT AIDRSSSKLE IGLDLNLPAP 240 LEEDDYSVVS DV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147254.1	0.0	PREDICTED: zinc finger protein ZAT4-like
TrEMBL	A0A0A0L275	0.0	A0A0A0L275_CUCSA; Uncharacterized protein
STRING	XP_004162353.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-30	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Cucsa.320970.1
Entrez Gene	101210780

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]