PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.321120.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 190aa    MW: 21542.7 Da    PI: 6.52
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.321120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-0985131249
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49 
                     rkR ++t++q  +L+e  e++  ++ ++  eLA +lgL  rqV vWFq
  Cucsa.321120.1  85 RKRFRLTEDQSAVLKESSEEHDSLNPQTL-ELAIQLGLRPRQVEVWFQ 131
                     89**********************99876.7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.5E-81057IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466892.18E-872132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-976131IPR009057Homeodomain-like
SMARTSM003896.3E-483144IPR001356Homeobox domain
PfamPF000465.2E-785131IPR001356Homeobox domain
CDDcd000867.57E-885131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MESGVELFAD RTSETGRSLL RSIEVNRMAP STADCEEEAR MSKPSSTGSS VYGKWIEHEM  60
NDEDVDGDGA CSRRISDEKD GGTCRKRFRL TEDQSAVLKE SSEEHDSLNP QTLELAIQLG  120
LRPRQVEVWF QRLSANVKIN ANSATRAMLH RCELFRSTHD EEIRFRGNLQ TQPSTKCKRV  180
STEGKRKWGX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818605e-87LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132605e-87LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147222.12e-56PREDICTED: homeobox-leucine zipper protein HAT4
RefseqXP_008448815.22e-56PREDICTED: homeobox-leucine zipper protein HAT4
TrEMBLA0A0A0L5G03e-91A0A0A0L5G0_CUCSA; Uncharacterized protein
STRINGXP_004147222.19e-56(Cucumis sativus)
STRINGXP_004167415.19e-56(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-26Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein