PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.321510.1

Common Name

Csa_3G016970, LOC101215791

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 389aa MW: 43201.4 Da PI: 8.9548

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.321510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26	2.7e-08	50	84	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C+ CGn a+ C +e C+ CC + C hv Cucsa.321510.1 50 KPKCRVCGNVARSRCPYESCKSCCARNQNPCYIHV 84 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-5	52	85	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAAPSPTLSN NSSDTATTTA GAVAANVAVS PNHLANRTGT PPKTLRGLNK PKCRVCGNVA 60 RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPSSSS PLFDKQSPDP SSSGTSNRVA 120 SLRQLSSNFS QFNNVRLPIR SPKPLTRKDA ATINEWRFSK LREFRERHIE AENEAFDRYM 180 KNINLLEEVF STKSMIDDRP LKDRPPVNSG TEANPEEMTP GLKLKLGSTS DNSRKRIRKI 240 VEDGLRKIKI VETIDNVDEV TDHAQADRGE DETNPNDGCK MLEGWHAKRT RALGDLIDKL 300 NKARNEEDLK SCLAMKHQLS DQHKTTSSEA ESEETDTSKE QQVIKKDLDS RKELGFSLPK 360 LVNKTNIDQQ TLNQIDAHFS SLKQIGNL*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAAPSPTLSN NSSDTATTTA GAVAANVAVS PNHLANRTGT PPKTLRGLNK PKCRVCGNVA  60
RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPSSSS PLFDKQSPDP SSSGTSNRVA  120
SLRQLSSNFS QFNNVRLPIR SPKPLTRKDA ATINEWRFSK LREFRERHIE AENEAFDRYM  180
KNINLLEEVF STKSMIDDRP LKDRPPVNSG TEANPEEMTP GLKLKLGSTS DNSRKRIRKI  240
VEDGLRKIKI VETIDNVDEV TDHAQADRGE DETNPNDGCK MLEGWHAKRT RALGDLIDKL  300
NKARNEEDLK SCLAMKHQLS DQHKTTSSEA ESEETDTSKE QQVIKKDLDS RKELGFSLPK  360
LVNKTNIDQQ TLNQIDAHFS SLKQIGNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150175.1	0.0	PREDICTED: uncharacterized protein LOC101215791
TrEMBL	A0A0A0L209	0.0	A0A0A0L209_CUCSA; Uncharacterized protein
STRING	XP_004165562.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	6e-84

Link Out ? help Back to Top
Phytozome	Cucsa.321510.1
Entrez Gene	101215791

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]