PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.322810.1
Common NameCsa_3G002610
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 215aa    MW: 23780.6 Da    PI: 10.4649
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.322810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.7e-15144193453
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                     ++r++r++kNRe+A rsR+RK+a+  eLe +v +L++eN +L+ + eel+
  Cucsa.322810.1 144 DRRQKRMIKNRESAARSRARKQAYANELELEVSNLKEENAKLRRQQEELQ 193
                     79*****************************************9988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-11141205IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.576143193IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.5E-12145195No hitNo description
Gene3DG3DSA:1.20.5.1709.3E-15145194No hitNo description
PfamPF001702.0E-13145193IPR004827Basic-leucine zipper domain
CDDcd147071.08E-24145199No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEEVWKDISL SSLHSRSDHD FSSAAPTPIS LHLHHHHSAA NLRHIILQDF LSTSTSKLDS  60
SSSSSSALAL PPVPAPPPTL LSLNSTRELH FPDNNSIATA TAAAHFRHHD PSSLSAAFHS  120
PFDQLLGPPP FAKKRLSDSD NSGDRRQKRM IKNRESAARS RARKQAYANE LELEVSNLKE  180
ENAKLRRQQE ELQAVAMAQV PRKHRLQRTS TAPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-159LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-159LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448521.13e-99PREDICTED: protein FD
TrEMBLA0A0A0L6641e-112A0A0A0L664_CUCSA; Uncharacterized protein
STRINGXP_008448521.11e-98(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.11e-34bZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]