PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.323040.1

Common Name

Csa_3G002330, LOC101203410

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WOX

Protein Properties

Length: 255aa MW: 28948.4 Da PI: 6.7024

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.323040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	9e-22	103	163	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Cucsa.323040.1 103 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 163 89***************99************************************97 PP
2	Wus_type_Homeobox	100.6	1.1e-32	102	165	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq Cucsa.323040.1 102 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 165 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-19	97	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.273	99	164	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-19	99	167	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-16	101	168	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-19	103	163	IPR001356	Homeobox domain
CDD	cd00086	3.51E-15	103	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MMEWEKPEQQ NPYHHHHHNP PLCDDHLHHL TGTTAAGALY VKVMTDDQLE TLRKQIAVYA 60 TICEQLVEMH KTLTAHQDLT GMRLGNMYCE PLMTSSSHKI TSRQRWTPTP VQLQILERIF 120 DQGNGTPSKQ KIKEITSELG QHGQISESNV YNWFQNRRAR SKRKQQSAAP AYGESEVETE 180 VESPKDKKTK PVDFQTNQSS APLGDDMCFQ SPEMSSELHF LDPNTNKADT LFPSNGSLKT 240 ARSFSQMSFY EGMP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	164	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146172.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	3e-84	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0A0L4U3	0.0	A0A0A0L4U3_CUCSA; Uncharacterized protein
STRING	XP_004146172.1	0.0	(Cucumis sativus)
STRING	XP_004159737.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-85	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Cucsa.323040.1
Entrez Gene	101203410

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]