PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.323040.2

Common Name

Csa_3G002330, LOC101203410

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WOX

Protein Properties

Length: 202aa MW: 22774.2 Da PI: 6.7916

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.323040.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69	5.8e-22	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Cucsa.323040.2 22 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	7.1e-33	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq Cucsa.323040.2 21 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-19	16	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.273	18	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-20	18	86	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-16	20	87	IPR001356	Homeobox domain
CDD	cd00086	1.44E-14	22	84	No hit	No description
Pfam	PF00046	8.0E-20	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MRLGNMYCEP LMTSSSHKIT SRQRWTPTPV QLQILERIFD QGNGTPSKQK IKEITSELGQ 60 HGQISESNVY NWFQNRRARS KRKQQSAAPA YGESEVETEV ESPKDKKTKP VDFQTNQSSA 120 PLGDDMCFQS PEMSSELHFL DPNTNKADTL FPSNGSLKTA RSFSQMSFYE AGNEQLTGKI 180 ETPENYSIYQ QAEGYNMTGR P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146172.1	1e-150	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	6e-59	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0A0L4U3	1e-148	A0A0A0L4U3_CUCSA; Uncharacterized protein
STRING	XP_004146172.1	1e-149	(Cucumis sativus)
STRING	XP_004159737.1	1e-149	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-61	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Cucsa.323040.2
Entrez Gene	101203410

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]