PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.323160.1
Common NameCsa_3G001720, LOC105435052
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 240aa    MW: 25828.4 Da    PI: 5.6991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.323160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-06136157223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  C+k+F+++  L  H+r+H
  Cucsa.323160.1 136 RCATCNKVFKSWKALFGHLRSH 157
                     6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642135157IPR007087Zinc finger, C2H2
PfamPF139128.4E-8136159IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
NTNTNANTNI NINIDAVSET SPDQRHRRER SPMAASPPPP ARIIDDINNP PTDVIEPSSS  60
IVVAAPESVT PGDVRRRQSV NAMFDVGTSS HEHVGGSSDV EAGKKRGRGD GGEQQQQVKA  120
AKKKGELTEV PKGEPRCATC NKVFKSWKAL FGHLRSHPER TYRGALPPPT AAELDIRRCQ  180
QQLASTLLTV AQQVSASRRG LDIDLNQPST ADDGDSPDNT RDAGFDLNLE PPPESDDEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108GKKRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652703.11e-176PREDICTED: uncharacterized protein LOC105435052
TrEMBLA0A0A0L0X71e-174A0A0A0L0X7_CUCSA; Uncharacterized protein
STRINGXP_008449156.11e-143(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-17C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]