PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.325250.1

Common Name

Csa_6G309970, LOC101211298

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 917aa MW: 104047 Da PI: 7.7439

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.325250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.1	1.2e-51	35	150	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e ++rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ve +++yYah+ + ptf rr Cucsa.325250.1 35 EaSARWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRR 129 4589***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ Cucsa.325250.1 130 CYWLLDKTLEHIVLVHYRETQ 150 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.854	29	155	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.0E-73	32	150	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-45	35	148	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.4E-8	358	458	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.24E-17	369	456	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.2E-8	370	455	IPR002909	IPT domain
CDD	cd00102	1.15E-4	370	456	No hit	No description
CDD	cd00204	1.98E-16	531	665	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.9E-17	555	668	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.44E-19	563	668	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.016	573	638	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.9E-7	578	668	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.9E-6	606	635	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.487	606	638	IPR002110	Ankyrin repeat
SMART	SM00248	3100	645	674	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	9.96E-6	715	820	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.577	717	746	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	64	769	791	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	770	797	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.028	792	814	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	793	817	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.016	795	814	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9.5	870	892	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	872	900	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MSLSMKADVQ GSLVGSEIHG FHTLQDLDVE NIREEASARW LRPNEIHAIL CNYKYFTIHV 60 KPVNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNV ERIHVYYAHG 120 LDSPTFVRRC YWLLDKTLEH IVLVHYRETQ EFQNSPSTSL NSNSGSVSNP STPWLLSEEL 180 DSKATHVYSV GENELSEPSD TTTVMTHEQR LHEINTLEWD DLLVKDEPFK PAIHKGDKLS 240 CFDQQNQVPI NATSNLLGEM SSFSNPVEST GRANGNISFT GSANLLLGGQ TNLNVEKRES 300 IAINSTDNLL DERLQSQDSF GRWINEVIIE SPGSVIDPAI EPSISYVHNS YRDSTLYHSQ 360 TLATEQIFNI TDVSPSWAFS TEKTKILIIG YFHNDFVHLA KSNLLVVCGD TSVNVDFVQP 420 GVYRCLVPPH APGLVHLYVS VDGHKPISQA LNFEYRAPNL EVPVVASEQS QKWEEFQIQM 480 RLAHMLFSTS KILSIISTKL LPTALQEAKK LAVKTADISD SWIYLLKSIT ENRTPFQQAR 540 EGVLEIVLRS RLREWLIERV AEGAKKSTEF DVNGQGVIHL CAILGYTWAV HLFDWAGLSI 600 NFRDKFGWTA LHWAAYYGRE RMVAVLLSAG AKPNLVTDPS SKNPLGCTAA DLASMNGYDG 660 LAAYLSEKAL VSHFKEMSLA GNVSGSLDTS STITDTSDCI SEEQMYMKET LAAYRTAADA 720 ASRIQAAFRE HSLKQRSDRI ELSSPEDEAR SIIAAMKIQH AYRNFETRKK MAAAARIQYR 780 FRTWKIRKDF LNMRRQTIRI QAAFRGFQVR RQYRKIVWSV GVLEKAILRW RLKRKGFRGL 840 QVAPTEMVEK QQSDVEEDFY LVSQKQAEER VERAVVRVQA MFRSKKAQEE YRRMRLTCDE 900 AALEYEVLSH PVYGND*

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MSLSMKADVQ GSLVGSEIHG FHTLQDLDVE NIREEASARW LRPNEIHAIL CNYKYFTIHV  60
KPVNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNV ERIHVYYAHG  120
LDSPTFVRRC YWLLDKTLEH IVLVHYRETQ EFQNSPSTSL NSNSGSVSNP STPWLLSEEL  180
DSKATHVYSV GENELSEPSD TTTVMTHEQR LHEINTLEWD DLLVKDEPFK PAIHKGDKLS  240
CFDQQNQVPI NATSNLLGEM SSFSNPVEST GRANGNISFT GSANLLLGGQ TNLNVEKRES  300
IAINSTDNLL DERLQSQDSF GRWINEVIIE SPGSVIDPAI EPSISYVHNS YRDSTLYHSQ  360
TLATEQIFNI TDVSPSWAFS TEKTKILIIG YFHNDFVHLA KSNLLVVCGD TSVNVDFVQP  420
GVYRCLVPPH APGLVHLYVS VDGHKPISQA LNFEYRAPNL EVPVVASEQS QKWEEFQIQM  480
RLAHMLFSTS KILSIISTKL LPTALQEAKK LAVKTADISD SWIYLLKSIT ENRTPFQQAR  540
EGVLEIVLRS RLREWLIERV AEGAKKSTEF DVNGQGVIHL CAILGYTWAV HLFDWAGLSI  600
NFRDKFGWTA LHWAAYYGRE RMVAVLLSAG AKPNLVTDPS SKNPLGCTAA DLASMNGYDG  660
LAAYLSEKAL VSHFKEMSLA GNVSGSLDTS STITDTSDCI SEEQMYMKET LAAYRTAADA  720
ASRIQAAFRE HSLKQRSDRI ELSSPEDEAR SIIAAMKIQH AYRNFETRKK MAAAARIQYR  780
FRTWKIRKDF LNMRRQTIRI QAAFRGFQVR RQYRKIVWSV GVLEKAILRW RLKRKGFRGL  840
QVAPTEMVEK QQSDVEEDFY LVSQKQAEER VERAVVRVQA MFRSKKAQEE YRRMRLTCDE  900
AALEYEVLSH PVYGND*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	0.0	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657270.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0A0KCD9	0.0	A0A0A0KCD9_CUCSA; Uncharacterized protein
STRING	XP_004161401.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Cucsa.325250.1
Entrez Gene	101211298

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]