PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.330590.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 69aa    MW: 7470.11 Da    PI: 10.1905
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.330590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.44.7e-142164346
          DUF260  3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46
                    a Ck+lr +C+k+Cvl  yfp ++p kf +vh +FGasn++kll
  Cucsa.330590.1 21 ATCKILRWRCTKKCVLVAYFPPSEPLKFIIVHCIFGASNIIKLL 64
                    79****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.5921868IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-132164IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
VVASPSPSPT VQASVVVISY ATCKILRWRC TKKCVLVAYF PPSEPLKFII VHCIFGASNI  60
IKLLLVRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147299.15e-21PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK082e-15LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1S3CK122e-18A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRINGXP_004147299.12e-20(Cucumis sativus)
STRINGXP_004161319.12e-20(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-18LOB domain-containing protein 11