PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.332450.7

Common Name

Csa_1G697530, LOC101207910

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 296aa MW: 31868.1 Da PI: 7.5604

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.332450.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	153	191	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Cucsa.332450.7 153 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 191 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.534	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.41E-6	151	195	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-7	151	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGMFQSKKLE DWEEEILNSN NNNTQHQQQV DVKKEHSPHA SSYVYGHGGG GSGGGGVGGG 60 VGGDDYQLVA SKQNWSPMIQ SSSPQSCVTS FSSNMLDFSN NNNNNKSLAD HSRPRNPPQV 120 LDRSSECNSN VNGGAVKKAR VQSSSNQTTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL 180 LEAIGYIRFL QSQIEALSLP YLGNTSGSTR QHQHQQHSLQ GERNCVFPED PGQLLNENCL 240 KRKGVSEQEE EGKKDLRSRG LCLVPVSCTL QVGSDNGADY WAPAFGGGGG GGVFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681811	8e-93	LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBank	LN713256	8e-93	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142511.1	0.0	PREDICTED: transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	1e-79	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0A0M120	0.0	A0A0A0M120_CUCSA; Uncharacterized protein
STRING	XP_004142511.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	5e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.332450.7
Entrez Gene	101207910

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]