PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.336890.1
Common NameCsa_3G812170, LOC101206353
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 334aa    MW: 38141.9 Da    PI: 5.4277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.336890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-193786255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+ kl+g
  Cucsa.336890.1 37 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDQAATKLYG 86
                    69****999.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.21E-313696No hitNo description
PfamPF008473.2E-133786IPR001471AP2/ERF domain
PROSITE profilePS5103222.6163794IPR001471AP2/ERF domain
SMARTSM003806.4E-3837100IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-213795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-303795IPR001471AP2/ERF domain
PRINTSPR003671.9E-103849IPR001471AP2/ERF domain
PRINTSPR003671.9E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MENGRDNKKP HTSPFHHKPW KKGPSRGKGG PQNASCEYRG VRQRTWGKWV AEIREPKKRT  60
RLWLGSFSTA EEAAMAYDQA ATKLYGPHAY LNLPHLANQN NDSSDYKSNF VKWVPSKNFI  120
SLFPHTNRAA ATVATTGSFM SLHLIHQRLQ QLKPPHPFLS SNSLTSPSKK LEDKGEKEKD  180
KDEEASVREE TTTKTTATSS GKEEEKPQID LNEFLQQLGI LKEEEEKLVI ELEEEKGNNN  240
NKDNDIDNYN DDGGCCLGSS EISNNCDYSD EVEVLSDKSF NWDSIMEIHP NIEDNHFGNF  300
QLYDHHFLNY EDELGFPNSI WDFEEDHSTR IIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-183894360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652126.10.0PREDICTED: dehydration-responsive element-binding protein 2F
TrEMBLA0A0A0LBF00.0A0A0A0LBF0_CUCSA; Uncharacterized protein
STRINGXP_008443124.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-47ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]