PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.337130.3

Common Name

Csa_3G814340, LOC101210085

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 200aa MW: 21968.6 Da PI: 8.9626

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.337130.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	8	62	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Cucsa.337130.3 8 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 62 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.701	1	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-17	8	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-32	8	63	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-26	8	63	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-8	10	61	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-22	94	139	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MPPGGGGKQR LRWTSDLHDR FVDAITQLGG PDRATPKGVL RVMGVPGLTI YHVKSHLQKY 60 RLAKYLPESP ADGSKDEKRS SESLSGTDSS SGLQINEALR MQMEVQKRLQ EQLEVQRQLQ 120 MRIEAQAKYL QKIIEEQQKL GGESKDSEVV PSAEDNKQKT CQSESYGDVS AGPSSPRKKQ 180 RVDHGSTDDS APSPSINLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	7	65	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-121	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-121	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136602.1	1e-144	PREDICTED: protein PHR1-LIKE 1 isoform X1
Swissprot	Q9SJW0	6e-71	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0A0LF93	1e-143	A0A0A0LF93_CUCSA; Uncharacterized protein
STRING	XP_004136602.1	1e-143	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.337130.3
Entrez Gene	101210085

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]