PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.337740.2

Common Name

Csa_3G819960, LOC101219149

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 433aa MW: 47612.4 Da PI: 9.0167

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.337740.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.6e-10	181	223	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cucsa.337740.2 181 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 223 56889*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.9E-8	179	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	181	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.6E-7	182	223	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.40E-21	183	234	No hit	No description
SuperFamily	SSF57959	8.04E-7	183	226	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-7	184	227	No hit	No description
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.6E-12	273	304	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MGSRTVKIGA DDLNKAVNGM PSFVSSMPTA NNSMGAEGSS IPSSRISDLR TLEQTLGFHI 60 EDVDLTRNPL YNQIKSNSST MNNNIQFGSL IKPLASTDVN LPTAVMGSQT LPLQKESNAN 120 LVSTSGGPRE NWGESNMADT STRTDTSTDD TDDKSQRLDK DQGNSLAVYD SSNKSKEKTA 180 DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISNSGDQA 240 HSMSGNGALA FDVEYSRWLE EHNRLMNELR AAVNSHAGMW KTPAERCFLW IGGFRSSEIL 300 KLLVSQLEPL AEQQLMGICN LQQLSQQAED ALSQGMDALQ QSLAETLASA TPATSGSSGN 360 VANYMGQMAM AMGKLGTLEG FLRQADNLRQ QTLQQMHRIL TTRQSARALL AINDYFSRLR 420 ALSSLWLARP RD*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MGSRTVKIGA DDLNKAVNGM PSFVSSMPTA NNSMGAEGSS IPSSRISDLR TLEQTLGFHI  60
EDVDLTRNPL YNQIKSNSST MNNNIQFGSL IKPLASTDVN LPTAVMGSQT LPLQKESNAN  120
LVSTSGGPRE NWGESNMADT STRTDTSTDD TDDKSQRLDK DQGNSLAVYD SSNKSKEKTA  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISNSGDQA  240
HSMSGNGALA FDVEYSRWLE EHNRLMNELR AAVNSHAGMW KTPAERCFLW IGGFRSSEIL  300
KLLVSQLEPL AEQQLMGICN LQQLSQQAED ALSQGMDALQ QSLAETLASA TPATSGSSGN  360
VANYMGQMAM AMGKLGTLEG FLRQADNLRQ QTLQQMHRIL TTRQSARALL AINDYFSRLR  420
ALSSLWLARP RD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-121	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-121	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652183.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	O24160	0.0	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A0A0LEV0	0.0	A0A0A0LEV0_CUCSA; Uncharacterized protein
STRING	XP_004136637.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-119	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.337740.2
Entrez Gene	101219149

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]