PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.337740.3

Common Name

Csa_3G819960, LOC101219149

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 389aa MW: 43073.4 Da PI: 8.667

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.337740.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4e-10	101	143	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cucsa.337740.3 101 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 143 56889*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.9E-8	99	162	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	101	145	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-7	102	143	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.61E-21	103	154	No hit	No description
SuperFamily	SSF57959	7.15E-7	103	146	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-7	104	147	No hit	No description
PROSITE pattern	PS00036	0	106	121	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-30	186	260	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MNNNIQFGSL IKPLASTDVN LPTAVMGSQT LPLQKESNAN LVSTSGGPRE NWGESNMADT 60 STRTDTSTDD TDDKSQRLDK DQGNSLAVYD SSNKSKEKTA DQKTLRRLAQ NREAARKSRL 120 RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISNSGDQA HSMSGNGALA FDVEYSRWLE 180 EHNRLMNELR AAVNSHAGDT ELRTIVDNVT TQFDDIFRLK GIAAKADVFH ILSGMWKTPA 240 ERCFLWIGGF RSSEILKLLV SQLEPLAEQQ LMGICNLQQL SQQAEDALSQ GMDALQQSLA 300 ETLASATPAT SGSSGNVANY MGQMAMAMGK LGTLEGFLRQ ADNLRQQTLQ QMHRILTTRQ 360 SARALLAIND YFSRLRALSS LWLARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MNNNIQFGSL IKPLASTDVN LPTAVMGSQT LPLQKESNAN LVSTSGGPRE NWGESNMADT  60
STRTDTSTDD TDDKSQRLDK DQGNSLAVYD SSNKSKEKTA DQKTLRRLAQ NREAARKSRL  120
RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISNSGDQA HSMSGNGALA FDVEYSRWLE  180
EHNRLMNELR AAVNSHAGDT ELRTIVDNVT TQFDDIFRLK GIAAKADVFH ILSGMWKTPA  240
ERCFLWIGGF RSSEILKLLV SQLEPLAEQQ LMGICNLQQL SQQAEDALSQ GMDALQQSLA  300
ETLASATPAT SGSSGNVANY MGQMAMAMGK LGTLEGFLRQ ADNLRQQTLQ QMHRILTTRQ  360
SARALLAIND YFSRLRALSS LWLARPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652183.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	O24160	0.0	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A0A0LEV0	0.0	A0A0A0LEV0_CUCSA; Uncharacterized protein
STRING	XP_008443255.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-145	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.337740.3
Entrez Gene	101219149

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]