PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338180.1
Common NameCsa_3G822450, LOC101216546
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 253aa    MW: 29462.8 Da    PI: 9.5906
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y ++ed+ ++++isw+++g++f+v+++ efa ++Lp+ Fkh+nf+SFvRQLn+YgF+k+ +++         weF +++Fkkg ke l++
  Cucsa.338180.1  25 FLTKTYMLVEDPMTDDVISWNSDGTTFIVWQPPEFAIDLLPTLFKHNNFSSFVRQLNTYGFRKIATSR---------WEFYNEKFKKGCKERLCE 110
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Cucsa.338180.1 111 IHRRKA 116
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3519109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3222114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVSLGNVCDQ LDSIGAVREL APSPFLTKTY MLVEDPMTDD VISWNSDGTT FIVWQPPEFA  60
IDLLPTLFKH NNFSSFVRQL NTYGFRKIAT SRWEFYNEKF KKGCKERLCE IHRRKAWTNK  120
RKHNSNAKAI QVTHQDNHDE DQRSLSTSSS DDQYTMLAYE NKKLKKENGV LSFELTNMKK  180
KCRELLDLVA KYKFVVVNGN KKKADEIMMK PNLKLFGVKL EVEEEDEMEI KQNKRKRSNY  240
PNKPFLLSQT CK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-1725892084Heat shock factor protein 1
5d5u_B1e-1725892993Heat shock factor protein 1
5d5v_B1e-1725892993Heat shock factor protein 1
5d5v_D1e-1725892993Heat shock factor protein 1
5hdg_A8e-1825891074Heat shock factor protein 1
5hdn_A8e-1825891074Heat shock factor protein 1
5hdn_B8e-1825891074Heat shock factor protein 1
5hdn_C8e-1825891074Heat shock factor protein 1
5hdn_D8e-1825891074Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136787.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222301e-63HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0A0LF370.0A0A0A0LF37_CUCSA; Uncharacterized protein
STRINGXP_004136787.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-65heat shock transcription factor B3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]