PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.339580.2

Common Name

Csa_3G835890

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 23735.5 Da PI: 4.442

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.339580.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.4e-18	4	48	12	56
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ Le+ Fe+++++ e++ +LAkklgL+ rqV vWFqNrRa++k Cucsa.339580.2 4 VQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 48 689*****************************************9 PP
2	HD-ZIP_I/II	117.2	9.6e-38	4	86	11	93
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 v++LE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd l+++ +++ ke++ L++e+++ Cucsa.339580.2 4 VQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLVSNYDSIVKENAVLKSEVAS 86 89****************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.9E-8	1	54	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.455	1	50	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	3	60	IPR009057	Homeodomain-like
CDD	cd00086	1.70E-15	4	51	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-19	4	57	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-15	4	48	IPR001356	Homeobox domain
PRINTS	PR00031	1.9E-6	21	30	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	25	48	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-6	30	46	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.7E-17	50	90	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MLKVQMLEKN FEEENKLEPE RKSQLAKKLG LQPRQVAVWF QNRRARWKTK QLERDYDVLK 60 ASYDLLVSNY DSIVKENAVL KSEVASLTEK CLAKELGGGE ATIPSITSTS ELLLADITNI 120 SVPHSGRKAE DRLSSGSDSS AVIDDNCPQL IDSGDSYFPN IEYPQCSNLP NGLQMEDDDT 180 NDNCNYLFSD MFAATNQQNQ EGRPPALWAW P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	50	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-151	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-151	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141083.1	1e-152	PREDICTED: homeobox-leucine zipper protein HAT5
Swissprot	Q02283	1e-63	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A0A0LG54	1e-154	A0A0A0LG54_CUCSA; Uncharacterized protein
STRING	XP_004167237.1	1e-151	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-55	homeobox 1

Link Out ? help Back to Top
Phytozome	Cucsa.339580.2

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]