PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.340790.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 196aa    MW: 22672.4 Da    PI: 8.4718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.340790.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding651.4e-203481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G ++Wk+Ia++ g++R++k+c++rw++yl
   Cucsa.340790.2 34 KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYL 81
                     79********************************************97 PP
2Myb_DNA-binding50.83.8e-1687132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   Cucsa.340790.2  87 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 132
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9212985IPR017930Myb domain
SuperFamilySSF466895.35E-3032128IPR009057Homeodomain-like
SMARTSM007175.0E-173383IPR001005SANT/Myb domain
PfamPF002491.6E-193481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-253588IPR009057Homeodomain-like
CDDcd001672.27E-113681No hitNo description
SMARTSM007171.9E-1586134IPR001005SANT/Myb domain
PROSITE profilePS5129420.43386136IPR017930Myb domain
PfamPF002491.6E-1487132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2589137IPR009057Homeodomain-like
CDDcd001672.27E-991132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTEEEEESLK RKVKQVVEGD INEAEILRNG GVNKGAWTAE EDQKLAQVIA IHGAKRWKSI  60
AAKAGLNRCG KSCRLRWLNY LRPNIKRGNI SDQEEDLILR LHKLLGNRWS LIAGRLPGRT  120
DNEIKNYWNS HLSKKMNQQS EKERRKGCKR KVNTESREEE TSQERENSSN LEYDVDNLFD  180
FSNEGPDLEW MSNFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-292913622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818281e-142LN681828.1 Cucumis melo genomic scaffold, anchoredscaffold00083.
GenBankLN7132581e-142LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151013.21e-140PREDICTED: transcription factor MYB114-like isoform X2
RefseqXP_008464000.11e-140PREDICTED: transcription factor MYB114-like
SwissprotO496081e-53MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A1S3CKJ61e-139A0A1S3CKJ6_CUCME; transcription factor MYB114-like
STRINGXP_008464000.11e-140(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.13e-53myb domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]