PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.341140.1

Common Name

Csa_3G848250, LOC101204728

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 528aa MW: 58542.8 Da PI: 8.8722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.341140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cucsa.341140.1 84 FVCEICSKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.7	0.00039	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Cucsa.341140.1 161 WKCDKCSKRYAVQSDWKAHSKTC 183 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.3E-5	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.68E-7	83	106	No hit	No description
SMART	SM00355	0.036	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	84	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	126	156	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-4	149	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.68E-7	156	181	No hit	No description
SMART	SM00355	140	161	181	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MIKSLLLQHQ SQAMEENLSN LTSASGEASA CSGNHSDQIP TNYSGQFFST PPPPKKKRNL 60 PGNPDPDAEV IALSPKTLMA TNRFVCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRANKEV 120 IRKKVYVCPE TSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS 180 KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TSNPPILIAN NNNNNNYNQN 240 HLLPPLSSIA TPNINSQLNF QITQQTHFNN PPFLDNTSFN NNSLKKENHQ LQSNNNNNDN 300 NNIPPWLTFP INNNSTSNNH NHHQIINPNH NHINLGPTSL HLIQSASPSS PHMSATALLQ 360 KAAQMGSTMS SNSNSNNNNN NNAEPPHTII PHTNCNFGLN LSSTTTSSSS RDIHQNQILE 420 EAAAGLSHAL PFYRNKIADF EGAGTSFELD QFGGVFKKNN DHHHHHQAAA GLSTRDFLGL 480 RAISHTEFLS NIAAAGNFSH CINNNHNVGA AQNPQTTQIQ NQSTWQG*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MIKSLLLQHQ SQAMEENLSN LTSASGEASA CSGNHSDQIP TNYSGQFFST PPPPKKKRNL  60
PGNPDPDAEV IALSPKTLMA TNRFVCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRANKEV  120
IRKKVYVCPE TSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TSNPPILIAN NNNNNNYNQN  240
HLLPPLSSIA TPNINSQLNF QITQQTHFNN PPFLDNTSFN NNSLKKENHQ LQSNNNNNDN  300
NNIPPWLTFP INNNSTSNNH NHHQIINPNH NHINLGPTSL HLIQSASPSS PHMSATALLQ  360
KAAQMGSTMS SNSNSNNNNN NNAEPPHTII PHTNCNFGLN LSSTTTSSSS RDIHQNQILE  420
EAAAGLSHAL PFYRNKIADF EGAGTSFELD QFGGVFKKNN DHHHHHQAAA GLSTRDFLGL  480
RAISHTEFLS NIAAAGNFSH CINNNHNVGA AQNPQTTQIQ NQSTWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	157	232	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-34	157	232	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	123	KLKQRANKEVIRKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682679	0.0	LN682679.1 Cucumis melo genomic scaffold, unanchored_scaffold00852.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652348.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Refseq	XP_011652349.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
TrEMBL	A0A0A0LID9	0.0	A0A0A0LID9_CUCSA; Uncharacterized protein
STRING	XP_004146819.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Cucsa.341140.1
Entrez Gene	101204728

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]