PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.341140.2

Common Name

Csa_3G848250, LOC101204728

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 450aa MW: 50226.5 Da PI: 9.1045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.341140.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.8e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cucsa.341140.2 6 FVCEICSKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.9	0.00032	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Cucsa.341140.2 83 WKCDKCSKRYAVQSDWKAHSKTC 105 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.2E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.99E-7	5	28	No hit	No description
PROSITE profile	PS50157	10.887	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	48	78	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-4	71	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.99E-7	78	103	No hit	No description
SMART	SM00355	140	83	103	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRANK EVIRKKVYVC PETSCVHHDP 60 SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR 120 RDSFITHRAF CDALAEESAR AITSNPPILI ANNNNNNNYN QNHLLPPLSS IATPNINSQL 180 NFQITQQTHF NNPPFLDNTS FNNNSLKKEN HQLQSNNNNN DNNNIPPWLT FPINNNSTSN 240 NHNHHQIINP NHNHINLGPT SLHLIQSASP SSPHMSATAL LQKAAQMGST MSSNSNSNNN 300 NNNNAEPPHT IIPHTNCNFG LNLSSTTTSS SSRDIHQNQI LEEAAAGLSH ALPFYRNKIA 360 DFEGAGTSFE LDQFGGVFKK NNDHHHHHQA AAGLSTRDFL GLRAISHTEF LSNIAAAGNF 420 SHCINNNHNV GAAQNPQTTQ IQNQSTWQG*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRANK EVIRKKVYVC PETSCVHHDP  60
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAEESAR AITSNPPILI ANNNNNNNYN QNHLLPPLSS IATPNINSQL  180
NFQITQQTHF NNPPFLDNTS FNNNSLKKEN HQLQSNNNNN DNNNIPPWLT FPINNNSTSN  240
NHNHHQIINP NHNHINLGPT SLHLIQSASP SSPHMSATAL LQKAAQMGST MSSNSNSNNN  300
NNNNAEPPHT IIPHTNCNFG LNLSSTTTSS SSRDIHQNQI LEEAAAGLSH ALPFYRNKIA  360
DFEGAGTSFE LDQFGGVFKK NNDHHHHHQA AAGLSTRDFL GLRAISHTEF LSNIAAAGNF  420
SHCINNNHNV GAAQNPQTTQ IQNQSTWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	79	154	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-34	79	154	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	45	KLKQRANKEVIRKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682679	0.0	LN682679.1 Cucumis melo genomic scaffold, unanchored_scaffold00852.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652348.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Refseq	XP_011652349.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
TrEMBL	A0A0A0LID9	0.0	A0A0A0LID9_CUCSA; Uncharacterized protein
STRING	XP_004146819.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	4e-97	indeterminate(ID)-domain 11

Link Out ? help Back to Top
Phytozome	Cucsa.341140.2
Entrez Gene	101204728

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]