PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.341800.2

Common Name

Csa_3G852470, LOC101209056

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 320aa MW: 35659.3 Da PI: 8.8016

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.341800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.3e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v+yL++kv+g++++l ++i ++d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + Cucsa.341800.2 14 LPPGFRFYPTDEELLVQYLCRKVAGHNFSL-QIIGDIDLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST- 106 79*************************9.89***********8777899*****************************999988. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Cucsa.341800.2 107 QGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-66	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	14	162	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGVAEKDPLS ELSLPPGFRF YPTDEELLVQ YLCRKVAGHN FSLQIIGDID LYKFDPWVLP 60 SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIISTQGKK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLI DTSRKTGSTK LDDWVLCRIY KKNSSAQKLP RMTSSISSME 180 CSNGGSSSTC SSSHLDDVLE SLPEIKDGFF RLPRVNSLLT LQQDHENLKF QNHLMGSTNF 240 EWASTAAATS FEGYNSVAEL APLAQSQAPS GLISSDMYIP AGQPPRSTVE QEVQSGFQRF 300 HNFGWLQQNL SNSGDGFGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-110	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-110	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-110	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-110	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-110	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-110	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-110	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-110	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-110	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-110	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681826	0.0	LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147806.1	0.0	PREDICTED: NAC domain-containing protein 72-like isoform X2
Swissprot	A0A3Q7HH64	1e-126	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A0A0LDN6	0.0	A0A0A0LDN6_CUCSA; Uncharacterized protein
STRING	XP_004147806.1	0.0	(Cucumis sativus)
STRING	XP_004154821.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-125	NAC family protein

Link Out ? help Back to Top
Phytozome	Cucsa.341800.2
Entrez Gene	101209056

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]