PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.341850.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 66aa MW: 7358.88 Da PI: 8.5032

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.341850.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.7	2.5e-11	20	62	5	47
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 k+l +C+++C+l pyfp ++p kf ++h +F +sn++kll Cucsa.341850.1 20 WKILHWRCTEKCILMPYFPPSEPLKFTIAHCIFDTSNIIKLLL 62 588999**********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.807	15	65	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-11	19	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
VVTSPSLLQA SVVVSSYVAW KILHWRCTEK CILMPYFPPS EPLKFTIAHC IFDTSNIIKL 60 LLVLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463550.1	6e-20	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-16	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S3CK12	1e-18	A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRING	XP_008463550.1	2e-19	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-19	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Cucsa.341850.1