PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342790.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 26411.7 Da    PI: 11.1647
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342790.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.8e-294191151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  Cucsa.342790.2 41 KRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 91
                    79***********************************************86 PP
2K-box94.12.4e-31103200198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l+ +++e++q +l+kLk+ ++nL+r++R+++Ge++++Ls++eL+ Leq+++++++ iR++K++++ +qie+ +kk k++ e++k+L 
  Cucsa.342790.2 103 YQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLL 197
                     7899999***************************************************************************************9 PP

           K-box  96 kkl 98 
                     +++
  Cucsa.342790.2 198 QEF 200
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.0853393IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-413392IPR002100Transcription factor, MADS-box
CDDcd002651.88E-3834112No hitNo description
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-293555IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-3635127IPR002100Transcription factor, MADS-box
PfamPF003191.1E-254289IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-295570IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-297091IPR002100Transcription factor, MADS-box
PfamPF014865.4E-22114200IPR002487Transcription factor, K-box
PROSITE profilePS5129715.144116212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYVYFSHKQQ HQQQQERRRS RRRRRRRRKR KNMARGKIQI KRIENPTNRQ VTYSKRRNGL  60
FKKANELTVL CDAKVSIIMF SSTGKLHEYI SPATSTKELF DQYQKTLGVD LWITHYERMQ  120
DNLKKLKDIN RNLRRQIRQR MGECMNDLSF EELRCLEQDM DNAVRIIRER KYRVISNQIE  180
THKKKLKSVG EIHKSLLQEF VSVIKFIGRY TLWCVTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-153391159MEF2C
5f28_B1e-153391159MEF2C
5f28_C1e-153391159MEF2C
5f28_D1e-153391159MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11628RRRSRRRRRRRRK
21630RRRSRRRRRRRRKRK
31827RSRRRRRRRR
42027RRRRRRRR
52127RRRRRRR
62229RRRRRRKR
72230RRRRRRKRK
82430RRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9440600.0AY944060.1 Cucumis sativus MADS box protein (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466510.11e-125PREDICTED: floral homeotic protein DEFICIENS isoform X1
SwissprotE0CPH46e-92AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A0A0LGG11e-127A0A0A0LGG1_CUCSA; Uncharacterized protein
STRINGXP_004154859.11e-143(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]