PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.342980.1

Common Name

Csa_3G872110, LOC101222539

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 425aa MW: 45888.1 Da PI: 9.7711

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.342980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	175	197	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F+ ++L+ H+ + H Cucsa.342980.1 175 PCPQCGEVFPKIESLELHQLVrH 197 7******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	174	197	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.517	174	202	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.3E-22	199	420	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.4E-12	201	420	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MALLTNSFQD HKKPLSNKRR KKHPNPTPPP SSAQSSWDHI KNLITCKQVE VSRVQEPGKR 60 SPAYSKLGSS CSSICSFRDV VHGNAKVVHR ADNSPESSSV GQETRLLTRK SANGSSSRSL 120 TAPTPARTKN GGSGSASYNS SSSRGIQLRK LSGCYECHTI VDPSRLPIPR SSICPCPQCG 180 EVFPKIESLE LHQLVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDRPICKI ERILKVHNTQ 240 RTIQRFEDCR DAVKTRALGS TRKNPRCAAD GNELLRFHCS ALFCDLGSRG STGLCGSIPA 300 CGVCTVIRHG FQSKPGGPPG VRTTASSGRA HDSFDCGDGR RRAMLVCRVI AGRVKRISDD 360 AAATGTTTTT ATEEENVVSA AAAAASYDSV SRHSGMYSNL EELVIFNPKA ILPCFVVIYE 420 ALQT*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MALLTNSFQD HKKPLSNKRR KKHPNPTPPP SSAQSSWDHI KNLITCKQVE VSRVQEPGKR  60
SPAYSKLGSS CSSICSFRDV VHGNAKVVHR ADNSPESSSV GQETRLLTRK SANGSSSRSL  120
TAPTPARTKN GGSGSASYNS SSSRGIQLRK LSGCYECHTI VDPSRLPIPR SSICPCPQCG  180
EVFPKIESLE LHQLVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDRPICKI ERILKVHNTQ  240
RTIQRFEDCR DAVKTRALGS TRKNPRCAAD GNELLRFHCS ALFCDLGSRG STGLCGSIPA  300
CGVCTVIRHG FQSKPGGPPG VRTTASSGRA HDSFDCGDGR RRAMLVCRVI AGRVKRISDD  360
AAATGTTTTT ATEEENVVSA AAAAASYDSV SRHSGMYSNL EELVIFNPKA ILPCFVVIYE  420
ALQT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136493.2	0.0	PREDICTED: uncharacterized protein LOC101222539
TrEMBL	A0A0A0LGH5	0.0	A0A0A0LGH5_CUCSA; Uncharacterized protein
STRING	XP_004162557.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10341	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-156	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Cucsa.342980.1
Entrez Gene	101222539

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]