PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.345830.1
Common NameCsa_7G058030, LOC101221125
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 203aa    MW: 23261.1 Da    PI: 4.8812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.345830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.94.9e-33111311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++++++++Pw+L+ k+ +e ++wyf+s++ +         r+t++g+W+  g+d +vls+
  Cucsa.345830.1  11 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLNLFTYDPWELDGKALGEGNRWYFYSRKIE--------GRVTDNGFWNPLGRDDPVLST 96 
                     79*************************999.99**************977778899******9865........699****************99 PP

             NAM  96 .kgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                      ++e+vg+kk + f+ ++a  g  kt+W+mhe+rl
  Cucsa.345830.1  97 aTSEVVGMKKYFLFHLQDADAGPlKTNWIMHEFRL 131
                     78899**********777766655*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-437165IPR003441NAC domain
PROSITE profilePS5100542.78611166IPR003441NAC domain
PfamPF023655.5E-2112131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAAPHSHNFN LPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLNLFT YDPWELDGKA  60
LGEGNRWYFY SRKIEGRVTD NGFWNPLGRD DPVLSTATSE VVGMKKYFLF HLQDADAGPL  120
KTNWIMHEFR LADAAAAVAT SSSSSRRRGR PKRDYSKWVL CRVYERDEEK EEEEDGAELS  180
CLDEVFLTLD DLDEISLPNR IQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-33817214171NO APICAL MERISTEM PROTEIN
1ut4_B1e-33817214171NO APICAL MERISTEM PROTEIN
1ut7_A1e-33817214171NO APICAL MERISTEM PROTEIN
1ut7_B1e-33817214171NO APICAL MERISTEM PROTEIN
4dul_A1e-33817214171NAC domain-containing protein 19
4dul_B1e-33817214171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153RRGRPKRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-135LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-135LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658766.11e-150PREDICTED: NAC transcription factor NAM-B2
SwissprotQ8GWK63e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0A0K5V41e-148A0A0A0K5V4_CUCSA; Uncharacterized protein
STRINGXP_004173277.11e-149(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-70xylem NAC domain 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  5. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]