PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.349370.1
Common NameCsa_6G092010, LOC101220356
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 258aa    MW: 29447.3 Da    PI: 9.4895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.349370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+ev+++k++PwdLp +    e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dk+++++
  Cucsa.349370.1  14 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPEVEVCKADPWDLPGN---MEQERYFFSTREAKYPNGNRSNRATTSGYWKATGIDKQIVTS 104
                     79****************************.89***************54...46799*********************************9988 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vglkktLvfy+g+ p+g++tdW+mheyrl
  Cucsa.349370.1 105 kGNQVVGLKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                     57778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-599173IPR003441NAC domain
PROSITE profilePS5100557.02814173IPR003441NAC domain
PfamPF023654.4E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSCP LPASIIPEVE VCKADPWDLP  60
GNMEQERYFF STREAKYPNG NRSNRATTSG YWKATGIDKQ IVTSKGNQVV GLKKTLVFYR  120
GKPPHGSRTD WIMHEYRLAS PPTVCLNASQ EKSSFQSCVG PMENWVLCRI FLKKRNGHQN  180
EEERNTSNSN ISYRKTRMGK PVFYDFMRKE RAETDLNLVP SSSSSGSSGI TEISNNELDD  240
HEESSSCNSF PYFRRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-501217915171NO APICAL MERISTEM PROTEIN
1ut4_B2e-501217915171NO APICAL MERISTEM PROTEIN
1ut7_A2e-501217915171NO APICAL MERISTEM PROTEIN
1ut7_B2e-501217915171NO APICAL MERISTEM PROTEIN
3swm_A3e-501217918174NAC domain-containing protein 19
3swm_B3e-501217918174NAC domain-containing protein 19
3swm_C3e-501217918174NAC domain-containing protein 19
3swm_D3e-501217918174NAC domain-containing protein 19
3swp_A3e-501217918174NAC domain-containing protein 19
3swp_B3e-501217918174NAC domain-containing protein 19
3swp_C3e-501217918174NAC domain-containing protein 19
3swp_D3e-501217918174NAC domain-containing protein 19
4dul_A2e-501217915171NAC domain-containing protein 19
4dul_B2e-501217915171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819251e-148LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132651e-148LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140548.10.0PREDICTED: NAC domain-containing protein 18
SwissprotQ9FY931e-109NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0A0KAC90.0A0A0A0KAC9_CUCSA; Uncharacterized protein
STRINGXP_004140548.10.0(Cucumis sativus)
STRINGXP_004173907.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-111NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]