PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.349650.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9010.3 Da PI: 10.886

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.349650.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.1	4e-27	27	77	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+ nr+vtf+kRr g+lKKA+ELSvLCd++v +i+f ++g+lye+ss Cucsa.349650.1 27 KLIEDRCNRHVTFCKRRSGLLKKAKELSVLCDVQVGIILFTNRGRLYEFSS 77 569**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	9.68E-26	19	79	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.338	19	79	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-30	19	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-26	21	41	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	21	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-23	29	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-26	41	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-26	56	77	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MTGTREKATE AGGGFGRKMG RKKIEVKLIE DRCNRHVTFC KRRSGLLKKA KELSVLCDVQ 60 VGIILFTNRG RLYEFSSGNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	2e-17	19	79	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	5e-91	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	5e-91	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656809.1	1e-37	PREDICTED: MADS-box transcription factor 8-like
Swissprot	Q38836	1e-23	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	A0A1S3CCC5	8e-34	A0A1S3CCC5_CUCME; MADS-box transcription factor 8-like
STRING	XP_004140533.1	1e-36	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	2e-23	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Cucsa.349650.1

Publications ? help Back to Top
Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]