PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.349690.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CAMTA
Protein Properties Length: 900aa    MW: 100669 Da    PI: 6.4526
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.349690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11711.8e-53221363116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+fr+DG+sw+kk+dg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  Cucsa.349690.1  22 REaQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQR 116
                     55599****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ + ++ivlvhy++
  Cucsa.349690.1 117 RSYWMLDLSCDHIVLVHYRD 136
                     ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.33217143IPR005559CG-1 DNA-binding domain
SMARTSM010768.9E-7420138IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4623136IPR005559CG-1 DNA-binding domain
PfamPF018332.3E-5335418IPR002909IPT domain
SuperFamilySSF812962.66E-17335418IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.4E-6335411IPR013783Immunoglobulin-like fold
CDDcd001020.00137335419No hitNo description
CDDcd002043.17E-14516622No hitNo description
SuperFamilySSF484032.02E-16517624IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-16528624IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.592530622IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-7539623IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.22563595IPR002110Ankyrin repeat
SMARTSM002485.2E-4563592IPR002110Ankyrin repeat
SMARTSM0001515680702IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638681709IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.3E-7683789IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.4737759IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114738767IPR000048IQ motif, EF-hand binding site
PfamPF006120.0087740758IPR000048IQ motif, EF-hand binding site
SMARTSM000154.2E-4760782IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883761785IPR000048IQ motif, EF-hand binding site
PfamPF006122.7E-5763782IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MPSFYLSVCH LRLRYDINDL YREAQTRWLK PPEVLFILQN HEKYQLTEEA PKQPTSGSLF  60
LFNKRVLRFF RRDGHSWRKK RDGRTVGEAH ERLKVGNAEA LNCYYAHGEH NPNFQRRSYW  120
MLDLSCDHIV LVHYRDINEG RSGTESVPHL SPASVSTSGS CSSQNLASEY QQTSLSPGSV  180
EVTSDTGNHT IESNGVDGHF EISEIKGSNE RDVSQALRRI EEQLSLNEDS LKDIGSFYGQ  240
DEDSNSNLID FYEMSNEDQV SVLQHQENAI HDNNYTSFMM QAFPMLGSCT STEYSSPLDT  300
HDTNSNYNIP FLKQEHGNSF EVDTSLIVAQ VQKFTIREIV PEQGYATEST KVIIIGSFLC  360
DPLESPWACM FGDIEVPLQI VQNGVLCCKA PPHLPGKVAF CITSGNREPC SEVREFEYKM  420
NVCSHCQSHS TGAAKSPEEL LLLVRLVQLL LSDSLMQKSD RLDTGFRSNS LKAGDDQWSS  480
LIEALLVGSE TPSSTTDWLF QELLKDKLLL WLSSQQKNRH DLTDCLLSKK EQGVIHMIAG  540
LGYVWALNPI LRCGVNINFR DINGWTALHW AARFGREKMV AALIASGASA GAVTDPSSQN  600
PDGKTAASIA DIHGHKGLAG YLSEVALTSH LSSLTLEESE LSKGSAEVEA EMTVSCISNG  660
NLSSAEDYIP LKNTLAAVRN AAQAAARIQS AFRAHSFRKR QQKEAAFAAC IDEYGIDPND  720
IQGLFAMSKM NFSNRRDYNA AALSIQKKYR GWKGRKEFLS LRQKVVKIQA HVRGYQVRKH  780
YKIICWAVGI LDKVVLRWRR KGVGLRGFRS EIGSIDESED DDILKVFRKQ KVEGNIDEAV  840
SRVLSMVDSP DARQQYHRMV EGFREAKAEL DGASNKSAAS TSLTDISGME DCNQYPKFI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140640.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0A0KCA80.0A0A0A0KCA8_CUCSA; Uncharacterized protein
STRINGXP_004140640.10.0(Cucumis sativus)
STRINGXP_004166127.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-178Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]