PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.349800.3

Common Name

Csa_6G095910, LOC101214878

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 734aa MW: 80431 Da PI: 5.7027

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.349800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Cucsa.349800.3 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.91E-17	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.091	19	73	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.0E-17	22	71	IPR006447	Myb domain, plants
SMART	SM00717	7.3E-13	23	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-13	24	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-8	24	64	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-9	26	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0042754	Biological Process	negative regulation of circadian rhythm
GO:0043433	Biological Process	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686	Biological Process	response to cadmium ion
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MDPNSSGEDL VFKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALVKG IPVGQTLDID IPPPRPKRKP SNPYPRKTPI SKLGANDGKV 120 LTLVSSSQRK QILDLEKEPL NEGTSGEEQA TIEKDAHDDN YSEVFTLSRE ANSISWKNTN 180 CVPSQVKLND SCAFREFVPS LKEPLQDKGP GKVLEMEISS TSQEKSMPAE KKEALSCVLS 240 GDEMQAAHNY PRHVPVHVVD GSLGANVQGS VTDTLLQEST FHPAMEVRGE HNIIGNPSDC 300 VSFEHQNNAP RCVYQSYPTI HPTPFTLLRP NQEHYKSLLH MSSSFSNLVV STLQQNPAAH 360 AIASLTATCW PYVNPETSVD SPVCDKEGSG TKQMNPTPSM EAIAAATVAA ATAWWAAHGL 420 LPLCAPFHSA FPSAGVSAPV VQSSDTCQNL ESKDKAESSQ QIVALQNQQL DAEQSEALTA 480 QHSGSKLPTH SSSDSEGSGG ANANDTVKPA HDEKTPAEVE FHDSNKGKRG KQVDRSSCGS 540 NTPSGSDQEI DATENNDKEE KEEENDLEMN RPAVELSNRR NRSISNTSES WKEVSDEGRL 600 AFQALFTRDV LPQSFSPPYD VENENKASEN VEKDSHVVDK DSGASVLDLN GKTCGSFSHQ 660 SMERDTSAIG INNGEGELLT IGLGNGTPKA CRTGFKPYKR CSVEAKEKRM TTSSNHCEEG 720 GQKRLRLEQK VTN*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MDPNSSGEDL VFKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALVKG IPVGQTLDID IPPPRPKRKP SNPYPRKTPI SKLGANDGKV  120
LTLVSSSQRK QILDLEKEPL NEGTSGEEQA TIEKDAHDDN YSEVFTLSRE ANSISWKNTN  180
CVPSQVKLND SCAFREFVPS LKEPLQDKGP GKVLEMEISS TSQEKSMPAE KKEALSCVLS  240
GDEMQAAHNY PRHVPVHVVD GSLGANVQGS VTDTLLQEST FHPAMEVRGE HNIIGNPSDC  300
VSFEHQNNAP RCVYQSYPTI HPTPFTLLRP NQEHYKSLLH MSSSFSNLVV STLQQNPAAH  360
AIASLTATCW PYVNPETSVD SPVCDKEGSG TKQMNPTPSM EAIAAATVAA ATAWWAAHGL  420
LPLCAPFHSA FPSAGVSAPV VQSSDTCQNL ESKDKAESSQ QIVALQNQQL DAEQSEALTA  480
QHSGSKLPTH SSSDSEGSGG ANANDTVKPA HDEKTPAEVE FHDSNKGKRG KQVDRSSCGS  540
NTPSGSDQEI DATENNDKEE KEEENDLEMN RPAVELSNRR NRSISNTSES WKEVSDEGRL  600
AFQALFTRDV LPQSFSPPYD VENENKASEN VEKDSHVVDK DSGASVLDLN GKTCGSFSHQ  660
SMERDTSAIG INNGEGELLT IGLGNGTPKA CRTGFKPYKR CSVEAKEKRM TTSSNHCEEG  720
GQKRLRLEQK VTN*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00119	DAP	Transfer from AT1G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	0.0	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140527.1	0.0	PREDICTED: protein LHY-like isoform X2
TrEMBL	A0A0A0K9R4	0.0	A0A0A0K9R4_CUCSA; Uncharacterized protein
STRING	XP_004140527.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	1e-106	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cucsa.349800.3
Entrez Gene	101214878

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]