PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.349890.1

Common Name

Csa_6G103520, LOC101212788

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 255aa MW: 28185.1 Da PI: 8.9988

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.349890.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.7e-39	22	82	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvP+Gg++rkn+++s Cucsa.349890.1 22 PKEQLDCPRCKSNNTKFCYYNNYSLNQPRYFCKSCRRYWTEGGSLRNVPIGGASRKNRSKS 82 67899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	22	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
KNPNYPCKLE MKVAKATTTK APKEQLDCPR CKSNNTKFCY YNNYSLNQPR YFCKSCRRYW 60 TEGGSLRNVP IGGASRKNRS KSSSTTTITT TSTSSSSDYF CSNNNKNQKL PNYPSSSQIS 120 TQIPVGLRDL NLADHDHLPK VENVNYNNFA FGFRGLSSFI PNLMPNSNHI NNNGNLGINS 180 NSQYPSSGFS LGDHVDEFKP SFGINSVDGR NLLQLPFQEL NQQSAAPNEG DHQNWSEMLG 240 GGSLVFDGGQ KEPN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	0.0	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140519.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like
Refseq	XP_011656836.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like
TrEMBL	A0A0A0KAL6	1e-179	A0A0A0KAL6_CUCSA; Uncharacterized protein
STRING	XP_004173888.1	1e-180	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24548	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	5e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.349890.1
Entrez Gene	101212788

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]