PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.350980.1
Common NameCsa_1G269870, LOC101212246
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 340aa    MW: 38831.8 Da    PI: 8.99
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.350980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-104491154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ +++
  Cucsa.350980.1 44 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIRIR 91
                    799***6.666899****999......44**********************9987 PP
2B383.51.9e-26167266187
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k+ltpsdv+k++rlv+pkk+a ++               +    ++ +l + d+  r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++
  Cucsa.350980.1 167 FQKELTPSDVGKLNRLVIPKKYAVKYfprisasttenvehvDD--DRDLQLLFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTI 259
                     99*************************9987766655543222..2555677777888************************************* PP

                     EEEE-SS CS
              B3  81 vFkldgr 87 
                      F+l + 
  Cucsa.350980.1 260 AFYLCEA 266
                     ***8654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-2344102No hitNo description
PfamPF008472.2E-54491IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1544101IPR016177DNA-binding domain
PROSITE profilePS5103216.60845100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-1745100IPR001471AP2/ERF domain
SMARTSM003806.1E-1945106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-32161269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-26166266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-24166278No hitNo description
PROSITE profilePS5086312.999167282IPR003340B3 DNA binding domain
PfamPF023629.3E-24167266IPR003340B3 DNA binding domain
SMARTSM010191.1E-20167282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MKQEFSSMIS KAKTNAVGET LDSSCITCPL PINGCSRQGR SLTSKFKGVV PQQNGHWGAQ  60
IYANHQRIWL GTFKSENEAA MAYDSAAIRI RSGDCHRNFP WTKVTIEEPN FQKLYTTETL  120
LNMIKDGSYR TKFSEYLRDR SESTQTSASP STEKAHNNGG TSIKQLFQKE LTPSDVGKLN  180
RLVIPKKYAV KYFPRISAST TENVEHVDDD RDLQLLFFDK MMRQWKFRYC YWKSSQSYVF  240
TRGWNRFVKE KQLKANDTIA FYLCEAAKSS DSKTTFCVVD VKNRDNSGGL VENETTCSEL  300
QLNLRHGEVE ESVSPKHIDD ELKDEREVKG FKLFGVHIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-281642885117B3 domain-containing transcription factor NGA1
5os9_B6e-281642885117B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146691.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_011655965.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_011655970.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-108RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0A0LTJ10.0A0A0A0LTJ1_CUCSA; DNA-binding protein RAV1
STRINGXP_004161873.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-105RAV family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]