PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.352340.1

Common Name

Csa_4G639950, LOC101204608

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 302aa MW: 33504.7 Da PI: 7.1628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.352340.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.9	1e-28	25	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF P+de+l+ +yL +k++g++ + + ik+++ ++++P dLp ka++k+wy+++ ++ +++ g + k+gyW+ +gk Cucsa.352340.1 25 LPPGCRFFPSDEQLLRFYLSNKASGHNDS--NLIKDLNPFDYDPFDLPDsacfsyGSKARKKHWYYYALTAFREN-GGWIRM--KTGYWRRKGKV 114 79*********************9954..48**********944788765556888**9988764.444443..579**** PP NAM 90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 kev+ ++g + g+k+t+vfy g + +k+ kt+W+m ey+l Cucsa.352340.1 115 KEVTGRRGLVLGIKRTFVFYLGnSINKSLKTNWIMYEYAL 154 ****************883567788*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-34	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	34.432	25	170	IPR003441	NAC domain
Pfam	PF02365	8.3E-18	26	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MELPQSLQPP SSSSSSSFSF SSSSLPPGCR FFPSDEQLLR FYLSNKASGH NDSNLIKDLN 60 PFDYDPFDLP DSACFSYGSK ARKKHWYYYA LTAFRENGGW IRMKTGYWRR KGKVKEVTGR 120 RGLVLGIKRT FVFYLGNSIN KSLKTNWIMY EYALDHRFKA SFVLHRVFVS GRGNRISGNG 180 LSSYGDGSVS AVFHNGNQQD GIQVNNLVDA EPCEGDAMNT TNVISTHEMG RAENSNCLLI 240 TDPVSAPAAT TLQVPSKAFP CEMMTSSPVT PPGTMPTHVI DKEQLISILE GDFLELDDLF 300 E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-20	24	154	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-20	24	154	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-20	24	154	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-20	24	154	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	6e-20	24	154	19	145	NAC domain-containing protein 19
3swm_B	6e-20	24	154	19	145	NAC domain-containing protein 19
3swm_C	6e-20	24	154	19	145	NAC domain-containing protein 19
3swm_D	6e-20	24	154	19	145	NAC domain-containing protein 19
3swp_A	6e-20	24	154	19	145	NAC domain-containing protein 19
3swp_B	6e-20	24	154	19	145	NAC domain-containing protein 19
3swp_C	6e-20	24	154	19	145	NAC domain-containing protein 19
3swp_D	6e-20	24	154	19	145	NAC domain-containing protein 19
4dul_A	5e-20	24	154	16	142	NAC domain-containing protein 19
4dul_B	5e-20	24	154	16	142	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141384.2	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A0A0L0B7	0.0	A0A0A0L0B7_CUCSA; Uncharacterized protein
STRING	XP_004169662.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	6e-20	NAC domain containing protein 62

Link Out ? help Back to Top
Phytozome	Cucsa.352340.1
Entrez Gene	101204608

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]