PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.352340.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 229aa    MW: 26617.4 Da    PI: 10.2114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.352340.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.95.1e-29251541128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     lppG+rF P+de+l+ +yL +k++g++ +  + ik+++ ++++P dLp         ka++k+wy+++ ++ +++ g   +   k+gyW+ +gk 
  Cucsa.352340.2  25 LPPGCRFFPSDEQLLRFYLSNKASGHNDS--NLIKDLNPFDYDPFDLPDsacfsyGSKARKKHWYYYALTAFREN-GGWIRM--KTGYWRRKGKV 114
                     79***********************9954..48**************944788765556888******9988764.444443..579******** PP

             NAM  90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                     kev+ ++g + g+k+t+vfy g + +k+ kt+W+m ey+l
  Cucsa.352340.2 115 KEVTGRRGLVLGIKRTFVFYLGnSINKSLKTNWIMYEYAL 154
                     ********************883567788*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3215158IPR003441NAC domain
PROSITE profilePS5100531.47925169IPR003441NAC domain
PfamPF023654.1E-1826154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MELPQSLQPP SSSSSSSFSF SSSSLPPGCR FFPSDEQLLR FYLSNKASGH NDSNLIKDLN  60
PFDYDPFDLP DSACFSYGSK ARKKHWYYYA LTAFRENGGW IRMKTGYWRR KGKVKEVTGR  120
RGLVLGIKRT FVFYLGNSIN KSLKTNWIMY EYALDHRFKV LLLPISFQSI GNRVNLFWRY  180
VFLSPFHRSL IVERPWFVQN VLSSNGSISL FDGQISRIWY GYCDRLFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-202415416142NO APICAL MERISTEM PROTEIN
1ut4_B3e-202415416142NO APICAL MERISTEM PROTEIN
1ut7_A3e-202415416142NO APICAL MERISTEM PROTEIN
1ut7_B3e-202415416142NO APICAL MERISTEM PROTEIN
4dul_A3e-202415416142NAC domain-containing protein 19
4dul_B3e-202415416142NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141384.26e-95PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0A0L0B71e-93A0A0A0L0B7_CUCSA; Uncharacterized protein
STRINGXP_004169662.12e-95(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-19NAC domain containing protein 62