PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.352730.1
Common NameCsa_4G642430, LOC101208953
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 206aa    MW: 22368.3 Da    PI: 6.7658
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.352730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.81.7e-282100194
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l++++a+p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  Cucsa.352730.1   2 SCNGCRVLRKGCSEACVLRSSLhwidsPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kael 94 
                     +a++
  Cucsa.352730.1  97 AADT 100
                     9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4081107IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-24299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLLS FISAVPYHQR  60
PALFQSLLFE ACGRTVNPVS GAVGLLSTGN WHVCQAAADT ILNGGVLRPI PGIEISANPT  120
PNLDDSSLTF NTDVWTTTTV HNLQFYPSTP SDFRCLPDLS LGRAKNHHPL ENRRSLDSEE  180
SVMTSFGSGD LGDQRKETKL LNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141401.11e-151PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE83e-61LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0A0L3S51e-150A0A0A0L3S5_CUCSA; Uncharacterized protein
STRINGXP_004141401.11e-150(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-62LOB domain-containing protein 38
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]