PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.353330.1
Common NameCsa_4G646060, LOC101214798
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 276aa    MW: 30158.3 Da    PI: 8.4192
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.353330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19128161134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Cucsa.353330.1 128 CSDCNTTTTPLWRSGPQGPKSLCNACGIRQRKAR 161
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.66E-13121161No hitNo description
SMARTSM004013.0E-20122174IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.099122158IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-16126161IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.52E-13127164No hitNo description
PROSITE patternPS003440128153IPR000679Zinc finger, GATA-type
PfamPF003205.2E-17128161IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKEGCERSRL LEKQVEEEDD NDHHQIMMKK QDDHNGSTKY WMSSKMRLMQ KMMINTNHNY  60
KKVMINGTDH GGANNSDHHQ KATRNYNSIN NEGNGGKWEA MTGKSSSSSI SCNSSNIGSV  120
QNNGVRVCSD CNTTTTPLWR SGPQGPKSLC NACGIRQRKA RRAMADLAAN SGGGLVAETT  180
EAAATSGKKE KHKEKKSRLS CEGDNNGGNN NVGDQVKIND KYCNNNNNTD DHISNNNNLK  240
SKSSGPSAFG KVFPRDEEEA AILLMELSCG LLHTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654173.11e-165PREDICTED: GATA transcription factor 21-like
TrEMBLA0A0A0L3Z91e-164A0A0A0L3Z9_CUCSA; Uncharacterized protein
STRINGXP_004141424.11e-156(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-22GATA family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]