PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.355680.1

Common Name

Csa_1G629180, LOC101221373

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HSF

Protein Properties

Length: 258aa MW: 29883.8 Da PI: 8.451

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.355680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.3	3.8e-36	29	121	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sw ++ ++f+v+ ++efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ e+ weF +++Fkkg+k+ll + Cucsa.355680.1 29 FLSKTYDLVEDPTTDHIVSWGQSLTTFIVWRPSEFATHILPNYFKHNNFSSFVRQLNTYGFKKIVAER---------WEFGNENFKKGEKQLLLE 114 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+ks+ Cucsa.355680.1 115 IQRRKSH 121 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.4E-37	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.86E-31	24	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.7E-52	25	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-19	29	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-31	29	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	68	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-19	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEERMEENYN AGLCSSSVES QKANNPAPFL SKTYDLVEDP TTDHIVSWGQ SLTTFIVWRP 60 SEFATHILPN YFKHNNFSSF VRQLNTYGFK KIVAERWEFG NENFKKGEKQ LLLEIQRRKS 120 HNHNNNSQQI PFQLFHLHQQ QQLSLCYTTT SSSDPDILAA LTQDNRRLRR RNFMLLSELA 180 QMKNLYSDII YFIQNNVKPL DNKYCNRSVP KLVELDPPSS PTPMSPEIRL EEGNGMVKLF 240 GVPIRGKKRV LPEESEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-21	23	118	15	120	Heat shock factor protein 1
5d5u_B	4e-21	23	118	24	129	Heat shock factor protein 1
5d5v_B	4e-21	23	118	24	129	Heat shock factor protein 1
5d5v_D	4e-21	23	118	24	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681807	0.0	LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139066.1	0.0	PREDICTED: heat stress transcription factor B-4b-like
Swissprot	Q7XHZ0	1e-71	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A0A0M2Y7	0.0	A0A0A0M2Y7_CUCSA; Uncharacterized protein
STRING	XP_004139066.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1612	33	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-62	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	Cucsa.355680.1
Entrez Gene	101221373

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]