PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.356550.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 48aa    MW: 5374.96 Da    PI: 9.8132
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.356550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-071111525
                    -TTTTT-SS-S CS
         zf-CCCH 15 CkyGdrCkFaH 25
                    C+yG+rCkF H
  Cucsa.356550.1  1 CQYGERCKFLH 11
                    *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.826114IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 48 aa     Download sequence    Send to blast
CQYGERCKFL HATQQAQQQK PNPFGFGVPN NGQSKAVADF GSKQNQYK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818082e-67LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132562e-67LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660212.13e-26PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBLA0A1S3B8373e-22A0A1S3B837_CUCME; zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBLA0A1S3B9C93e-22A0A1S3B9C9_CUCME; zinc finger CCCH domain-containing protein 16 isoform X1
STRINGXP_004139162.18e-26(Cucumis sativus)